HJWCLAFXY_n01_ydcC_5_rep2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HJWCLAFXY_n01_ydcC_5_rep2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11706053
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTTTATCCGTTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTA	22371	0.1911062593002099	No Hit
CTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAA	18989	0.16221522318410825	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATCTCGTAT	18252	0.15591933506537173	TruSeq Adapter, Index 1 (97% over 36bp)
CGATTACTTAAGCGTCTACGAGCGTAGCCTGCATATTTATGGTTTCACTC	14962	0.1278142171404828	No Hit
CTTAAATATAACTGGCAAAACTAACAGTTTTAACCAAAACGTAGCATTAG	12062	0.1030407089392129	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGATAG	3465	43.34049	35
AGGCCTA	4855	42.31261	22
CTCAGAT	5305	41.24325	1
GGCCTAA	4955	40.964977	23
GATAGAT	3705	38.738003	37
ACTCCAG	4060	38.358566	23
CGTATGC	3955	38.233295	46
GCCTAAC	5350	37.875854	24
TCGTATG	3895	37.837116	45
CGATAGA	3880	37.802956	36
ATAGATC	3490	36.310802	38
CTCGTAT	3675	35.72369	44
CAGGCCT	6050	34.301918	21
GTATGCC	4410	34.287857	47
ACACATG	5870	34.286934	29
GTCACAG	4500	34.22465	29
AGCGATA	4490	33.602856	34
CAGATTG	6395	33.553036	3
TCCAGTC	4595	33.513493	25
TAGATCT	3805	32.570717	39