HJWCLAFXY_n01_168_T4_rep1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HJWCLAFXY_n01_168_T4_rep1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	7980793
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTAT	20021	0.25086479501473097	TruSeq Adapter, Index 19 (97% over 38bp)
TCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCACTTAAA	12683	0.158919044761592	No Hit
TACGGATTCGACAGGGATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGA	11929	0.14947136205637712	No Hit
ACGGATTCGACAGGGATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGAT	10147	0.12714275385917165	No Hit
GATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCA	9605	0.12035144878460072	No Hit
CGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCACTTAAAT	9293	0.11644206283761525	No Hit
CTCGTAAACACGCACTTAAATATAACTGGCAAAACTAACAGTTTTAACCA	9029	0.11313412088247371	No Hit
CGATTACTTAAGCGTCTACGAGCGTAGCCTGCATATTTATGGTTTCACTC	8929	0.11188111256613222	No Hit
CAGGGATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACA	8832	0.11066569449928096	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GAAGCTA	4125	40.905437	36
TATCTCG	3795	40.31592	41
ACTCCAG	4255	40.3025	23
CACACGT	4630	38.090527	12
CTATCTC	4230	36.086285	40
GCACACG	4985	35.448154	11
TCGTATG	4675	35.41821	45
GTCACCT	4855	35.040443	29
CGTATGC	4895	34.61152	46
AGTCACC	5025	34.06291	28
CTCGTAT	4700	33.818478	44
CAGTCAC	5150	33.235096	27
CTCCAGT	5300	32.358093	24
CCAGTCA	5435	31.621122	26
CACGTCT	5650	31.214008	14
TCCAGTC	5655	30.45227	25
ACGTCTG	5760	30.43566	15
AGCACAC	5905	29.984585	10
GTATGCC	5670	29.695272	47
AGCTATC	5330	29.62263	38