HJWCLAFXY_n01_168_T3_rep1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HJWCLAFXY_n01_168_T3_rep1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9584352
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATTCGTATCTCGTAT	48003	0.5008476316395725	TruSeq Adapter, Index 7 (97% over 35bp)
CGATTACTTAAGCGTCTACGAGCGTAGCCTGCATATTTATGGTTTCACTC	14699	0.15336456757848627	No Hit
CGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCACTTAAAT	13365	0.13944604705670244	No Hit
ACGGATTCGACAGGGATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGAT	12223	0.12753079185739422	No Hit
CAGGGATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACA	12122	0.1264769908283836	No Hit
CTCGTAAACACGCACTTAAATATAACTGGCAAAACTAACAGTTTTAACCA	11223	0.11709711830283362	No Hit
GATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCA	10759	0.1122558937735175	No Hit
TCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCACTTAAA	10656	0.11118122539739775	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATCTCG	7505	54.951668	41
AGTCACG	10340	54.161762	28
ACTCCAG	10595	53.181072	23
GTATCTC	8385	50.394302	40
CACACGT	11370	50.012897	12
CCAGTCA	11325	49.387646	26
CTCCAGT	11510	48.98609	24
CGTATCT	9150	48.744236	39
GTCACGA	11570	48.616646	29
GCACACG	11790	48.260696	11
CAGTCAC	11780	47.866566	27
TCGTATG	8060	47.858883	45
ATTCGTA	11500	47.790882	36
CGTATGC	8525	46.928688	46
TCCAGTC	12155	46.33125	25
CTCGTAT	8570	45.587387	44
CACGTCT	12615	45.38216	14
ACGTCTG	12720	45.062798	15
TCGTATC	11110	44.64816	38
TTCGTAT	11890	44.544674	37