[2022-08-24 15:16:59,882] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml
[2022-08-24 15:16:59,882] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml
[2022-08-24 15:16:59,882] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml
[2022-08-24 15:16:59,883] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml
[2022-08-24 15:16:59,883] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}}
[2022-08-24 15:16:59,883] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HJVLTDRX2/merged
[2022-08-24 15:17:00,453] multiqc [WARNING] MultiQC Version v1.12 now available!
[2022-08-24 15:17:00,453] multiqc [INFO ] This is MultiQC v1.9
[2022-08-24 15:17:00,453] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HJVLTDRX2/merged
[2022-08-24 15:17:00,453] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HJVLTDRX2/merged
[2022-08-24 15:17:00,453] multiqc [INFO ] Template : default
[2022-08-24 15:17:00,453] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode]
[2022-08-24 15:17:00,453] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HJVLTDRX2/merged
[2022-08-24 15:17:00,454] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean
[2022-08-24 15:17:00,454] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-24003233/tmp_pmr44wg
[2022-08-24 15:17:00,563] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HJVLTDRX2_2_fastqc.html
[2022-08-24 15:17:00,566] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HJVLTDRX2_2_fastqc.html
[2022-08-24 15:17:00,615] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HJVLTDRX2_3_fastqc.html
[2022-08-24 15:17:00,617] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HJVLTDRX2_3_fastqc.html
[2022-08-24 15:17:00,658] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HJVLTDRX2_1_fastqc.html
[2022-08-24 15:17:00,660] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HJVLTDRX2_1_fastqc.html
[2022-08-24 15:17:01,002] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2
[2022-08-24 15:17:01,004] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2
[2022-08-24 15:17:01,009] multiqc.modules.custom_content.custom_content [WARNING] Not able to parse custom data in undetermined_barcodes_mqc.txt
[2022-08-24 15:17:01,011] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table)
[2022-08-24 15:17:01,020] multiqc [DEBUG ] No samples found: conpair
[2022-08-24 15:17:01,025] multiqc [DEBUG ] No samples found: peddy
[2022-08-24 15:17:01,031] multiqc [DEBUG ] No samples found: somalier
[2022-08-24 15:17:01,036] multiqc [DEBUG ] No samples found: methylQA
[2022-08-24 15:17:01,045] multiqc [DEBUG ] No samples found: mosdepth
[2022-08-24 15:17:01,050] multiqc [DEBUG ] No samples found: phantompeakqualtools
[2022-08-24 15:17:01,053] multiqc [DEBUG ] No samples found: qualimap
[2022-08-24 15:17:01,059] multiqc [DEBUG ] No samples found: preseq
[2022-08-24 15:17:01,064] multiqc [DEBUG ] No samples found: quast
[2022-08-24 15:17:01,069] multiqc [DEBUG ] No samples found: qorts
[2022-08-24 15:17:01,074] multiqc [DEBUG ] No samples found: rna_seqc
[2022-08-24 15:17:01,079] multiqc [DEBUG ] No samples found: rockhopper
[2022-08-24 15:17:01,084] multiqc [DEBUG ] No samples found: rsem
[2022-08-24 15:17:01,096] multiqc [DEBUG ] No samples found: rseqc
[2022-08-24 15:17:01,101] multiqc [DEBUG ] No samples found: busco
[2022-08-24 15:17:01,106] multiqc [DEBUG ] No samples found: goleft_indexcov
[2022-08-24 15:17:01,111] multiqc [DEBUG ] No samples found: disambiguate
[2022-08-24 15:17:01,116] multiqc [DEBUG ] No samples found: supernova
[2022-08-24 15:17:01,131] multiqc [DEBUG ] No samples found: deeptools
[2022-08-24 15:17:01,137] multiqc [DEBUG ] No samples found: sargasso
[2022-08-24 15:17:01,142] multiqc [DEBUG ] No samples found: verifybamid
[2022-08-24 15:17:01,147] multiqc [DEBUG ] No samples found: mirtrace
[2022-08-24 15:17:01,152] multiqc [DEBUG ] No samples found: happy
[2022-08-24 15:17:01,157] multiqc [DEBUG ] No samples found: mirtop
[2022-08-24 15:17:01,164] multiqc [DEBUG ] No samples found: homer
[2022-08-24 15:17:01,169] multiqc [DEBUG ] No samples found: macs2
[2022-08-24 15:17:01,175] multiqc [DEBUG ] No samples found: theta2
[2022-08-24 15:17:01,181] multiqc [DEBUG ] No samples found: snpeff
[2022-08-24 15:17:01,189] multiqc [DEBUG ] No samples found: gatk
[2022-08-24 15:17:01,193] multiqc [DEBUG ] No samples found: htseq
[2022-08-24 15:17:01,200] multiqc [DEBUG ] No samples found: bcftools
[2022-08-24 15:17:01,204] multiqc [DEBUG ] No samples found: featureCounts
[2022-08-24 15:17:01,212] multiqc [DEBUG ] No samples found: fgbio
[2022-08-24 15:17:01,229] multiqc [DEBUG ] No samples found: dragen
[2022-08-24 15:17:01,235] multiqc [DEBUG ] No samples found: dedup
[2022-08-24 15:17:01,240] multiqc [DEBUG ] No samples found: damageprofiler
[2022-08-24 15:17:01,270] multiqc [DEBUG ] No samples found: biobambam2
[2022-08-24 15:17:01,275] multiqc [DEBUG ] No samples found: mtnucratio
[2022-08-24 15:17:01,278] multiqc [DEBUG ] No samples found: picard
[2022-08-24 15:17:01,283] multiqc [DEBUG ] No samples found: prokka
[2022-08-24 15:17:01,287] multiqc [DEBUG ] No samples found: samblaster
[2022-08-24 15:17:01,296] multiqc [DEBUG ] No samples found: samtools
[2022-08-24 15:17:01,301] multiqc [DEBUG ] No samples found: sexdeterrmine
[2022-08-24 15:17:01,307] multiqc [DEBUG ] No samples found: bamtools
[2022-08-24 15:17:01,312] multiqc [DEBUG ] No samples found: jellyfish
[2022-08-24 15:17:01,321] multiqc [DEBUG ] No samples found: vcftools
[2022-08-24 15:17:01,326] multiqc [DEBUG ] No samples found: longranger
[2022-08-24 15:17:01,332] multiqc [DEBUG ] No samples found: stacks
[2022-08-24 15:17:01,337] multiqc [DEBUG ] No samples found: varscan2
[2022-08-24 15:17:01,356] multiqc [DEBUG ] No samples found: bbmap
[2022-08-24 15:17:01,362] multiqc [DEBUG ] No samples found: bismark
[2022-08-24 15:17:01,369] multiqc [DEBUG ] No samples found: biscuit
[2022-08-24 15:17:01,375] multiqc [DEBUG ] No samples found: hicexplorer
[2022-08-24 15:17:01,380] multiqc [DEBUG ] No samples found: hicup
[2022-08-24 15:17:01,386] multiqc [DEBUG ] No samples found: hicpro
[2022-08-24 15:17:01,391] multiqc [DEBUG ] No samples found: salmon
[2022-08-24 15:17:01,397] multiqc [DEBUG ] No samples found: kallisto
[2022-08-24 15:17:01,402] multiqc [DEBUG ] No samples found: slamdunk
[2022-08-24 15:17:01,408] multiqc [DEBUG ] No samples found: star
[2022-08-24 15:17:01,413] multiqc [DEBUG ] No samples found: hisat2
[2022-08-24 15:17:01,419] multiqc [DEBUG ] No samples found: tophat
[2022-08-24 15:17:01,425] multiqc [DEBUG ] No samples found: bowtie2
[2022-08-24 15:17:01,430] multiqc [DEBUG ] No samples found: bowtie1
[2022-08-24 15:17:01,436] multiqc [DEBUG ] No samples found: snpsplit
[2022-08-24 15:17:01,442] multiqc [DEBUG ] No samples found: kat
[2022-08-24 15:17:01,446] multiqc [DEBUG ] No samples found: leehom
[2022-08-24 15:17:01,452] multiqc [DEBUG ] No samples found: adapterRemoval
[2022-08-24 15:17:01,458] multiqc [DEBUG ] No samples found: clipandmerge
[2022-08-24 15:17:01,463] multiqc [DEBUG ] No samples found: cutadapt
[2022-08-24 15:17:01,468] multiqc [DEBUG ] No samples found: flexbar
[2022-08-24 15:17:01,474] multiqc [DEBUG ] No samples found: kaiju
[2022-08-24 15:17:01,480] multiqc [DEBUG ] No samples found: kraken
[2022-08-24 15:17:01,486] multiqc [DEBUG ] No samples found: malt
[2022-08-24 15:17:01,491] multiqc [DEBUG ] No samples found: trimmomatic
[2022-08-24 15:17:01,497] multiqc [DEBUG ] No samples found: sickle
[2022-08-24 15:17:01,502] multiqc [DEBUG ] No samples found: skewer
[2022-08-24 15:17:01,507] multiqc [DEBUG ] No samples found: sortmerna
[2022-08-24 15:17:01,512] multiqc [DEBUG ] No samples found: biobloomtools
[2022-08-24 15:17:01,517] multiqc [DEBUG ] No samples found: fastq_screen
[2022-08-24 15:17:01,523] multiqc [DEBUG ] No samples found: afterqc
[2022-08-24 15:17:01,529] multiqc [DEBUG ] No samples found: fastp
[2022-08-24 15:17:01,630] multiqc.modules.fastqc.fastqc [INFO ] Found 3 reports
[2022-08-24 15:17:01,675] multiqc [DEBUG ] No samples found: pycoqc
[2022-08-24 15:17:01,681] multiqc [DEBUG ] No samples found: minionqc
[2022-08-24 15:17:01,686] multiqc [DEBUG ] No samples found: multivcfanalyzer
[2022-08-24 15:17:01,692] multiqc [DEBUG ] No samples found: clusterflow
[2022-08-24 15:17:01,698] multiqc [DEBUG ] No samples found: bcl2fastq
[2022-08-24 15:17:01,704] multiqc [DEBUG ] No samples found: interop
[2022-08-24 15:17:01,709] multiqc [DEBUG ] No samples found: ivar
[2022-08-24 15:17:01,715] multiqc [DEBUG ] No samples found: flash
[2022-08-24 15:17:01,721] multiqc [DEBUG ] No samples found: seqyclean
[2022-08-24 15:17:01,721] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found.
[2022-08-24 15:17:01,721] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'.
[2022-08-24 15:17:01,721] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'.
[2022-08-24 15:17:01,725] multiqc [INFO ] Compressing plot data
[2022-08-24 15:17:01,781] multiqc [INFO ] Report : multiqc_report.html
[2022-08-24 15:17:01,781] multiqc [INFO ] Data : multiqc_data
[2022-08-24 15:17:01,781] multiqc [DEBUG ] Moving data file from '/state/partition1/job-24003233/tmp_pmr44wg/multiqc_data' to '/scratch/gencore/logs/html/HJVLTDRX2/merged/multiqc_data'
[2022-08-24 15:17:01,926] multiqc [INFO ] MultiQC complete