FastQCFastQC Report
Thu 14 Jun 2018
HJV3MBCX2_l02n02_azbabrh-3.352000000e818b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJV3MBCX2_l02n02_azbabrh-3.352000000e818b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7577717
Sequences flagged as poor quality0
Sequence length51
%GC37

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGACCT6850.014.18759723
TATACAC133750.014.11651845
TTGCGAC6400.013.82571421
TGCGACC6300.013.32490522
ATACACA102700.012.50230245
TAGGACG6900.011.903195
TACCGCC9550.011.86019519
ACCGTCG5500.011.6114839
TTATACA192100.011.5808745
CCGTCGT5650.011.55982510
CGTCGTT6100.011.45840911
CCGCCAA10300.011.45431321
GTGTAAG19000.011.1896251
AATACCG9750.010.90399117
CGACCTC9350.010.81324924
ATTGCGA8200.010.77397420
ACCGCCA11150.010.7677820
GTCGTTA6500.010.72100112
GTCCTAG8850.010.7058681
GTACTAG12750.010.693581
Produced by FastQC (version 0.11.2)