FastQCFastQC Report
Thu 4 Apr 2019
HJTFLAFXY_n01_C24CAMTA1_F1b_B_g-b.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJTFLAFXY_n01_C24CAMTA1_F1b_B_g-b.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences790318
Sequences flagged as poor quality0
Sequence length76
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGCGTA207.9222606E-570.0086061
GGCGCGC150.002224678269.9997541
GGGTAAT21650.065.958193
GGGGTAA8050.065.660252
GCGTAAT6600.063.6361353
GGTAATC15750.061.7775544
CGGGGTA2500.061.6075741
GGATAAT27450.061.5844763
GGCTAAT12400.060.685273
CGGGTAA4450.060.569242
CGGTAAT12150.060.493613
AGGGGTA3300.060.4619751
GTAATCG6400.060.1560335
GTAATCT21300.059.976315
GTAATAG16200.059.4133645
GGGATAA12100.059.3048132
GCTAATC8100.059.1973154
GGTAATA30550.059.001424
GGGCTAA5650.058.856792
GTAATAT38800.058.633815
Produced by FastQC (version 0.11.5)