HJT3VADXX l01n02 long - dna2rnh201 - pnk.34200000008968.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HJT3VADXX l01n02 long - dna2rnh201 - pnk.34200000008968.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	977407
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG	4255	0.4353355357594124	Illumina Single End PCR Primer 1 (100% over 51bp)
ACACTCTTTCCAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTC	2484	0.2541418262811705	Illumina Single End PCR Primer 1 (100% over 40bp)
ACACTCTTTCCCAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCT	1548	0.15837823956652652	Illumina Single End PCR Primer 1 (100% over 39bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	1526	0.15612738603263532	No Hit
ACACTCTTTCAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCG	1315	0.13453965441213334	Illumina Single End PCR Primer 1 (100% over 41bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGAG	1290	0.0	42.2332	8
GGTCGCC	450	0.0	41.495785	44
GTCGCCG	475	0.0	39.3118	45
ATCGAGA	1565	0.0	39.235146	9
GTGGTCG	490	0.0	38.56553	42
TCGAGAT	1890	0.0	38.444527	10
AGCACAC	900	0.0	37.99419	17
GCACACG	730	0.0	37.909054	18
AGATCAG	1325	0.0	37.715584	7
AGATCGA	990	0.0	37.51738	7
ACACGAG	370	0.0	37.09273	20
GAGCACA	1075	0.0	36.413036	16
CACACGA	390	0.0	36.34433	19
AGAGCAC	1105	0.0	36.035213	15
CAGATCA	840	0.0	35.64151	6
ACACTCT	975	0.0	35.304104	1
CCGGGCA	45	8.7050284E-7	34.99645	1
GATCTAG	705	0.0	34.4876	8
GATCAGA	1500	0.0	34.219364	8
CACACGT	375	0.0	34.198284	19