FastQCFastQC Report
Mon 2 Nov 2020
HJNTYDRXX_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJNTYDRXX_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1493511620
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGCTAC2785300.016.6190811
TCGGGAC3138850.015.8642751
GCCCGAA2236150.015.3304361
ATCGGCG2667100.015.2451441
CTGGACG1939300.015.2085941
TGGGCTG2547600.015.1871941
GGGACCT2175750.015.172461
CCTACGT3901900.015.0963471
CCGGACA2393200.015.05171
GGGATCC3544850.014.9092171
CCGGGTA2524150.014.8836861
AGGCTGC3230400.014.8598611
AATGGCT3045200.014.8390241
CGGGACG1601400.014.8380152
CGGCGAG1300800.014.5927833
TGACGCG3853600.014.5740731
TACCGGG2822000.014.5607781
CACGAAT4785850.014.5596181
TCGCCGA2261050.014.4264258
GTGCCTA2632750.014.3044028
Produced by FastQC (version 0.11.5)