FastQCFastQC Report
Wed 19 Aug 2020
HJNNJDRXX_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJNNJDRXX_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1856547807
Sequences flagged as poor quality0
Sequence length28
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGAACC4558500.017.1878091
GGGCTAC3709900.016.6823441
GCCCGAA3109450.016.1115261
GGGATGA3894300.015.8816721
CTGGACG2841700.015.4449651
CCCGGAA2959400.015.3864691
AACGGGA3759050.015.3196881
TGGGCTG3175050.015.3102021
AAACGCT4602100.015.286091
CCCTGAT3400550.015.1091581
ACGCACG3495700.014.9142581
GATGACT4484600.014.8973581
CCCGAAG4340650.014.8143991
ATGGGAG3405700.014.8057241
CGGACAC4367750.014.7986031
AGGGAAG3068250.014.6901173
CCGGTGA4499200.014.5500041
GAAGCCC4220150.014.4879241
GCGGAAA3446800.014.4097511
GTGCTGG2819600.014.3415751
Produced by FastQC (version 0.11.5)