FastQCFastQC Report
Mon 2 Nov 2020
HJNMWDRXX_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJNMWDRXX_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000048766
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCCGAA1781250.016.8741051
TGGGCTG2023850.016.5565451
ATCGGCG1875650.016.2126451
CGGCGAG953950.015.78080753
GAAGCCC2919850.015.6131331
CGGAACC2002800.015.3548511
TCGACGA1805100.015.2566338
TAACGAC2493000.015.1756751
GTGGAAC1496550.015.1572688
CTGGACG1288950.015.12210751
GATGACT2342950.015.083411
CCCGGAA1290050.014.8788251
GGAATCT2482400.014.8249781
TCGGGAC1658750.014.7099041
GGGACCT1302550.014.575471
GGGCTGC1098850.014.4232822
GACTGAT2001750.014.3840611
AGCCGGA1053050.014.3713698
CCCACCT1770600.014.277026
GGGCTAC1238000.014.2115381
Produced by FastQC (version 0.11.5)