FastQCFastQC Report
Thu 23 Mar 2017
HJNJTAFXX_n02_minidip01_15.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJNJTAFXX_n02_minidip01_15.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2263341
Sequences flagged as poor quality0
Sequence length75
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25700.11354895263241377No Hit

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGGGG1402.0842423E-417.2494143
TACACCG4150.015.7939465
TAGGTAG5700.014.5251815
CTAATAC9650.014.3000333
GGACCGT3152.2449967E-814.2369836
ACTGTGC5400.014.0544598
CTATGCA6450.013.90588959
ACCGTGC2751.0795702E-613.7989218
TATACTG13550.013.7480035
CTTACAC5050.013.6629023
TAGACAG8100.013.6285655
TATACAG11550.013.4405095
GTACAGG6200.013.3561551
TATATAC18600.013.3543843
CGCGCCT2102.9980732E-413.14241122
GTATTAG9950.012.830411
TAATACT15600.012.8259214
ATACTCC18600.012.61247469
CGCACCT3902.734123E-812.38392366
TGGACCG3902.7350325E-812.3836485
Produced by FastQC (version 0.11.2)