FastQCFastQC Report
Wed 19 Aug 2020
HJNGMDRXX_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJNGMDRXX_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2152910812
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCGCTG1537699057.142418726447457No Hit
AGCAGAGC1503065546.981550427552036No Hit
TCCTGCGC1493214776.935794839605274No Hit
GTAGCACA1425604826.621755123593109No Hit
CATCTCCA1389658496.454788940880659No Hit
TTATCGTT1380616236.412788780216316No Hit
GCGGATAG1374267646.383300377981473No Hit
TCCAATGC1296940126.024123771273066No Hit
AAGATCAT1250220005.8071146887807075No Hit
GAGGATCT1246000105.787513783919814No Hit
CCTGAAGG1241883885.768394459621488No Hit
GTCCGGTC1173638475.451403111816413No Hit
TGATCTCA1157338015.375689524847814No Hit
CGTTTGAT1114573285.1770527315276444No Hit
CTTATGAG1063362514.9391851444703505No Hit
AGACCATA1013684404.708436570385899No Hit
GGGGGGGG130261400.6050478230400563No Hit
CTTAGGAG57095820.26520290428083No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)