FastQCFastQC Report
Wed 19 Aug 2020
HJNGMDRXX_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJNGMDRXX_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2152910812
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGACCT4188650.016.5657391
CCCGGAA3591750.015.6141231
GGAACCC4120900.015.5571531
CTGGACG3190250.015.3224441
CCGGACA3483300.015.2899361
GGGCTAC3557500.015.2591231
GCCCGAA3070300.015.0157191
TCGCCGA3339750.014.9966168
TGACTCC4122050.014.9519161
GTGCTGG3645400.014.8667261
TTGACCC4499200.014.8113531
CCGGTGA4857250.014.7933711
CCCGAAG4030900.014.6695281
ATCGGCG3469250.014.6436031
AACCTGA4276050.014.6235071
ATACCGA4431800.014.4697611
TGGAACT4433650.014.4686891
CGGAGAA4095500.014.4607171
TCGGGAC4089000.014.406171
AAACGCT4557250.014.3970691
Produced by FastQC (version 0.11.5)