FastQCFastQC Report
Fri 10 Nov 2023
HJM7CAFX5_n01_schiC_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJM7CAFX5_n01_schiC_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14338464
Sequences flagged as poor quality0
Sequence length151
%GC53

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACCGATAATCCTGTCTCTTATACACATCTGAGGCGGAGACGGTGCGTT427350.29804447673056195No Hit
GTCCAGACTGAGGCGATCGAGGACGGCAGATGTGTATAAGAGACAGGGAC175720.12255148110704188No Hit
AAGCTAGGGGAGGCGGCACCGTCTCCGCCTCAGATGTGTATAAGAGACAG171720.11976178201514472No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)