HJJT3BGX5_n01_ir64_3bs_6_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HJJT3BGX5_n01_ir64_3bs_6_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8594911
Sequences flagged as poor quality	0
Sequence length	75
%GC	53

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT	13830	0.1609091705545293	No Hit
CGGGACTACCCGCTGAGTTTAAGCATATAAATAAGCGGAGGAGAAGAAACTTACGAGGATTCCCCTAGTAACGGC	11222	0.13056563354757253	No Hit
GTGGATACCTAGGTACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCA	10485	0.1219907919930759	No Hit
CAAATATTCAAATGAGAACTTTGAAGGCCGAAGAGGAGAAAGGTTCCATGTGAACGGCACTTGCACATGGGTAAG	10087	0.11736014485781178	No Hit
CGCGAATCCTCTTGAAAGAGAGGGGTGCCCTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTG	9601	0.11170563604439884	No Hit
CCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCCGATCCCTGGTCG	9292	0.10811048537908072	No Hit
CTTAAACCTATAACCATCTTTCGGCTAACCTAGCCTCCTCCGTCCCTCCGTACCAACAAGGGGTAGTACAGGAAT	8804	0.10243270698207348	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	1070	50.941196	42
TCGTATG	1100	49.551605	43
TATGCCG	1115	48.575592	46
AGTCACG	1175	47.856735	28
CACGGCT	1205	45.520115	31
CACGTCT	1550	42.51063	14
ACGTCTG	1535	42.476555	15
ACACGTC	1600	40.966316	13
ATGCCGT	1360	40.078503	47
CGTATGC	1415	39.008286	44
CAGTCAC	1450	38.780907	27
CGGGACT	2065	38.28643	1
GCTACAT	1465	37.677162	35
GTCACGG	1515	36.433483	29
GTCTGAA	1860	34.869102	17
CTACATC	1620	33.859497	36
GGCTACA	1690	32.865105	34
AGCACAC	2090	31.527388	10
GAGCACA	2170	30.842026	9
GCCGTCT	1790	30.643435	49