HJJJKBGX5_n01_input_bzip1_5_pchx_r1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HJJJKBGX5_n01_input_bzip1_5_pchx_r1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	27456500
Sequences flagged as poor quality	0
Sequence length	75
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTAGCTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGG	68708	0.25024311183144243	RNA PCR Primer, Index 38 (100% over 43bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCCGTCT	17995	62.459564	49
ATGCCGT	19100	61.93456	47
CGTATGC	19505	61.798428	44
TGCCGTC	18765	61.753326	48
TATGCCG	19495	61.49368	46
GTATGCC	19630	61.42226	45
CCGTCTT	18650	60.488026	50
TCTCGTA	17950	60.0601	41
ATCTCGT	18280	59.504288	40
TGCTTGA	18295	58.343056	58
GCTTGAA	18820	58.09055	59
TAGCTAT	22025	56.71863	35
CTAGCTA	22740	55.953068	34
CTTGAAA	19795	55.68264	60
ACCTAGC	23295	54.679436	32
TATCTCG	22765	48.402668	39
TCGTATG	26435	45.76747	43
TTCTGCT	22425	45.6442	55
TGTCGTA	1710	45.594536	41
TGAAAAA	27425	44.31709	62