HJJJKBGX5_n01_input_bzip1_180_pchx_r1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HJJJKBGX5_n01_input_bzip1_180_pchx_r1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	27187083
Sequences flagged as poor quality	0
Sequence length	75
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTATACATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGG	68008	0.2501482045720021	RNA PCR Primer, Index 39 (100% over 43bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	17600	62.0386	44
GCCGTCT	17425	61.96871	49
GTATGCC	17625	61.676567	45
TATGCCG	17655	61.5328	46
TGCCGTC	17650	61.491474	48
ATGCCGT	17685	61.467316	47
CCGTCTT	18145	59.509995	50
TCTCGTA	17440	59.363518	41
ATCTCGT	17735	58.24013	40
TACATCT	18420	56.03777	37
TGCTTGA	18900	55.909874	58
GCTTGAA	19000	55.90623	59
ATACATC	19215	54.09661	36
CTATACA	20960	52.458088	34
CCTATAC	21210	51.98607	33
CTTGAAA	20510	51.790363	60
ACCTATA	22555	49.008404	32
TTCTGCT	23300	45.02605	55
TCGTATG	25200	44.095016	43
CTCGTAT	24735	43.37591	42