HJJJKBGX5_n01_ev_5_pchx_r2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HJJJKBGX5_n01_ev_5_pchx_r2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13717937
Sequences flagged as poor quality	0
Sequence length	75
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGTAGCATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGG	117550	0.8569072740310734	RNA PCR Primer, Index 24 (100% over 43bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGTAGCATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAATGG	15841	0.11547654723884503	RNA PCR Primer, Index 24 (100% over 43bp)

Adapter graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATGCC	37080	62.000465	45
TCTCGTA	34215	61.929066	41
CGTATGC	37135	61.750935	44
GTAGCAT	42400	61.423466	35
TAGCATC	39260	61.239403	36
GGTAGCA	44390	60.505123	34
TCGTATG	37905	59.75932	43
CTCGTAT	36125	59.571537	42
CGGTAGC	45525	59.330524	33
CTTGAAA	33055	59.1973	60
ACGGTAG	45735	59.179012	32
CACGGTA	46095	58.709557	31
TGCTTGA	31600	58.66943	58
TATGCCG	38775	58.489452	46
GCTTGAA	33125	58.46794	59
ATCTCGT	37685	58.23152	40
TGAAAAA	41445	57.7767	62
ATGCCGT	38420	57.045475	47
CCGTCTT	35475	56.60762	50
GCATCTC	39800	56.316315	38