HJJJKBGX5_n01_damid_nlp7_r1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HJJJKBGX5_n01_damid_nlp7_r1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20702986
Sequences flagged as poor quality	0
Sequence length	75
%GC	60

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCTCGGCCGCGACCACGCTGCCCTATAGTGAGTCGTATTAGAGATCGGAAGAGCACACGTCTGAACTCCAGTCA	351731	1.698938500948607	Illumina Multiplexing PCR Primer 2.01 (100% over 33bp)
CTAATACGACTCACTATAGGGCAGCGTGGTCGCGGCCGAGGAAGATCGGAAGAGCACACGTCTGAACTCCAGTCA	245298	1.1848435776365787	Illumina Multiplexing PCR Primer 2.01 (100% over 33bp)
TCCTCGGCCGCGACCACGCTGCCCTATAGTGAGTCGTATTAGATCCTCGGCCGCGACCACGCTGCCCTATAGTGA	86005	0.41542316649395405	No Hit
CTAATACGACTCACTATAGGGCAGCGTGGTCGCGGCCGAGGATCTAATACGACTCACTATAGGGCAGCGTGGTCG	75957	0.3668891047890387	No Hit
TCCTCGGCCGCGACCACGCTGCCCTATAGTGAGTCGTATTAGATCCTCGGCCGCGACCAGATCGGAAGAGCACAC	33870	0.16359958896750448	No Hit
AAGATGGTTGGCATCGAGGGCGGCGAGAATGCGCTGGCGCCTGACGTCGCCGTCGTCATTGCGCGCTGCCGCCAT	22455	0.10846261500635705	No Hit
GGTCGCGGCCGAGGATCTAATACGACTCACTATAGGGCAGCGTGGTCGCGGCCGAGGAAGATCGGAAGAGCACAC	21929	0.10592191870293494	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCTGTA	20775	63.732952	13
ACCCTTA	11480	63.62738	1
GAATCCA	21675	60.777374	1
CCCTTAT	12250	59.937923	2
GCTGTAG	22140	59.75687	14
AGATGGT	26720	59.490536	2
CTGTAGT	16335	59.34543	15
ATGGTTG	27160	58.23993	4
CACTGCA	12625	58.204514	11
TTATTCC	12615	58.127537	5
AATCCAC	22780	57.95053	2
TTCCACT	12695	57.80945	8
GTTGGCA	27625	56.9432	7
CTAATAC	875785	56.937916	1
CTTATTC	12925	56.759518	4
GATGGTT	28095	56.349888	3
TGTAGTC	12580	56.27258	16
ACTGCAC	13055	56.207577	12
AAGATGG	28620	55.673615	1
TAATACG	896170	55.565506	2