FastQCFastQC Report
Fri 11 Mar 2022
HJHWJAFX3_n01_undetermined.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJHWJAFX3_n01_undetermined.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7033287
Sequences flagged as poor quality0
Sequence length74
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCTGAGG1141661.623223963418527No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACAGTGTT618480.879361243185441No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCAGTGG561730.7986735078491749No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACGACACC456680.6493123343324394No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACGTCCTG353130.5020838762871471No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACGGAATT286250.4069932024670684No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACAGTGT270530.38464234432634414No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACTGATGT266730.3792394651320215No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCCTGTC222720.31666559319987936No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACTGATG220140.31299732258899715No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACCAGTG210350.29907779961204484No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGACAC203490.28932418085597816No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACTGTCTC195850.27846155005476103No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGAAT173260.24634285505482711No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACGCATAA141180.20073118017222957No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGTCCT135880.19319558550646376No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACCCTGT99960.14212415901697173No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACTGTCT74300.10564050635215085No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)