FastQCFastQC Report
Fri 11 Mar 2022
HJHWJAFX3_n01_3688_rep3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJHWJAFX3_n01_3688_rep3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15617682
Sequences flagged as poor quality0
Sequence length74
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACAGTGTTGCACATCTCGTATGCCGTCTTCTGCTTGAAAAA3108371.990288955813033TruSeq Adapter, Index 18 (96% over 27bp)
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACAGTGTTGCACATCTCGTATGCCGTCTTCTGCGTGAAAAA581100.3720782635989131Illumina PCR Primer Index 11 (96% over 26bp)
CTGTCTCTTATACACATCTCCGAGCCCACGAGACAGTGTTGCACATCTCGTATGCCGTCTTCTGCTTGAAAAAA451360.2890057564240327TruSeq Adapter, Index 18 (96% over 27bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)