HJHJYBCXY_l01n01_8643red1-032817.3510000008702b.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HJHJYBCXY_l01n01_8643red1-032817.3510000008702b.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	7794478
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCCGATCTCGTATG	89600	1.149531758252445	TruSeq Adapter, Index 16 (97% over 40bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTCCCG	9760	42.83399	35
GTCCCGA	9830	42.597633	36
GCACACG	10220	42.180813	11
CCCGTCC	10070	41.469616	33
ACCCGTC	10135	41.22532	32
ACACGTC	10470	41.195118	13
CCCGATC	10155	41.190025	38
CACACGT	10480	41.15581	12
TCACCCG	10225	41.149307	30
CACCCGT	10250	40.917236	31
CCGTCCC	10205	40.833874	34
GATCGGA	10715	40.75862	1
ACGTCTG	10595	40.51797	15
CACGTCT	10685	40.366207	14
CCGATCT	10390	40.34502	39
AGCACAC	10725	40.299564	10
CGATCTC	10380	40.188023	40
GTCACCC	10475	40.167225	29
TCCCGAT	10465	40.034378	37
GAGCACA	10830	40.03325	9