FastQCFastQC Report
Fri 8 Dec 2017
HJCFYBCXY_l01n01_ah8630a-1217.351000000ab782.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJCFYBCXY_l01n01_ah8630a-1217.351000000ab782.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16279164
Sequences flagged as poor quality0
Sequence length51
%GC36

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCACACG36050.020.53300511
GATCGGA40950.018.5202121
ACACGTC40250.018.4463313
CACACGT40100.018.3470112
CACGTCT42000.018.10628314
ACGTCTG43400.017.57415815
TATCTCG43150.016.89650241
CAGTCAC44450.016.8049127
CGTCTGA44700.016.76105116
TCGTATG45350.016.52152845
AGCACAC46300.016.08454910
CCGTATC45700.016.0520838
GTTCCGT47150.015.55637635
AGATCGG28250.015.5341011
GAGCACA48450.015.5100989
GTCACAG49150.015.47249629
CTCGTAT49750.015.19796544
TCCAGTC49250.015.16707225
CCAGTCA49100.015.12175926
CGTATCT49400.014.84979739
Produced by FastQC (version 0.11.2)