HJCFYBCXY_l01n01_ah119spikeb-1217.351000000ab909.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HJCFYBCXY_l01n01_ah119spikeb-1217.351000000ab909.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8130560
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTCAGAATCTCGTATG	366731	4.510525720245592	TruSeq Adapter, Index 15 (97% over 40bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCACACG	41280	43.842804	11
GATCGGA	42025	43.800694	1
ACACGTC	41460	43.71216	13
CACGTCT	41495	43.59395	14
ACGTCTG	41595	43.548645	15
CACACGT	41630	43.51744	12
TCGGAAG	42360	43.396908	3
AGCACAC	41830	43.395424	10
GAGCACA	42045	43.32871	9
CGTCTGA	42110	43.021397	16
GAACTCC	41670	42.95891	21
AGAGCAC	42545	42.909397	8
CGGAAGA	42885	42.844128	4
ATCGGAA	43000	42.83028	2
CAGTCAC	41815	42.798916	27
TCGTATG	41860	42.758286	45
TCCAGTC	41770	42.656498	25
GTCTGAA	42650	42.608574	17
CCAGTCA	41855	42.602123	26
TCACATG	42160	42.4906	30