FastQCFastQC Report
Sat 16 Nov 2024
HJ7W5DRX5_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJ7W5DRX5_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences995952679
Sequences flagged as poor quality0
Sequence length301
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG23147747123.241814182619414No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG533311475.354787242858554No Hit
GGCTTGGTCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTG248065192.490732694740811No Hit
GGCTTGGTCATTTAGAGGAAGTAGAAGTCGTAACAAGGTTTCCGTAGGTG154410441.5503792826285474No Hit
GGCTTGGCATCGATGAAGAACGCAGCCGCTGTCTCTTATACACATCTCCG106331091.0676319492083017No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG105672251.0610167754767392No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG47254610.4744664178969491No Hit
GGCTTGATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTG38456740.38613019283820815No Hit
GGCTTGGTCATTTAGAGGAAGTACGCAGCCGCTGTCTCTTATACACATCT24883430.2498455049589761No Hit
GGCTTGGTCATTTAGAGGAAGAACGCAGCCGCTGTCTCTTATACACATCT23386390.2348142687208937No Hit
GTCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG11910760.1195916256981121No Hit
CTCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG11875280.11923538387309263No Hit
GGCTTGGCATTGAGGAAGAACGCAGCCGCTGTCTCTTATACACATCTCCG10625660.10668840221072391No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)