[2019-11-14 08:04:59,996] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/20170330/intel/lib/python2.7/site-packages/multiqc-1.0.dev0-py2.7.egg/multiqc_config.yaml
[2019-11-14 08:04:59,997] multiqc [DEBUG ] No MultiQC config found: /home/mk5636/.multiqc_config.yaml
[2019-11-14 08:04:59,997] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml
[2019-11-14 08:05:00,009] multiqc [DEBUG ] Loading config settings from: /home/mk5636/SCRIPTS/hpcpipe/mqc_config.yaml
[2019-11-14 08:05:00,009] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}}
[2019-11-14 08:05:00,010] multiqc [DEBUG ] Command used: /share/apps/multiqc/20170330/intel/bin/multiqc -f -c /home/mk5636/SCRIPTS/hpcpipe/mqc_config.yaml /beegfs/mk5636/logs/html/HJ777BGXC/merged
[2019-11-14 08:05:00,010] multiqc [DEBUG ] Could not connect to multiqc.info for version check
[2019-11-14 08:05:00,010] multiqc [INFO ] This is MultiQC v1.0.dev0
[2019-11-14 08:05:00,010] multiqc [DEBUG ] Command : /share/apps/multiqc/20170330/intel/bin/multiqc -f -c /home/mk5636/SCRIPTS/hpcpipe/mqc_config.yaml /beegfs/mk5636/logs/html/HJ777BGXC/merged
[2019-11-14 08:05:00,010] multiqc [DEBUG ] Working dir : /beegfs/mk5636/logs/html/HJ777BGXC/merged
[2019-11-14 08:05:00,010] multiqc [INFO ] Template : default
[2019-11-14 08:05:00,010] multiqc [DEBUG ] Running in --force mode, will overwrite any existing reports.
[2019-11-14 08:05:00,010] multiqc [INFO ] Searching '/beegfs/mk5636/logs/html/HJ777BGXC/merged'
[2019-11-14 08:05:00,011] multiqc [DEBUG ] Analysing modules: rna_seqc, custom_content, peddy, methylQA, qualimap, preseq, quast, rseqc, busco, goleft_indexcov, snpeff, gatk, htseq, bcftools, featureCounts, picard, prokka, samblaster, samtools, bamtools, bismark, hicup, salmon, kallisto, slamdunk, star, tophat, bowtie2, bowtie1, cutadapt, trimmomatic, skewer, fastq_screen, fastqc, clusterflow
[2019-11-14 08:05:00,011] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-5626375/tmpu7ATpb
[2019-11-14 08:05:00,538] multiqc.modules.rna_seqc.rna_seqc [DEBUG ] Could not find any RNA-SeQC data in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:00,582] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 33 samples (table)
[2019-11-14 08:05:00,592] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table)
[2019-11-14 08:05:00,594] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table)
[2019-11-14 08:05:00,616] multiqc.modules.peddy.peddy [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:00,628] multiqc.modules.methylQA.methylQA [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:00,638] multiqc.modules.qualimap.QM_BamQC [DEBUG ] Using default Qualimap thresholds: 1, 5, 10, 30, 50
[2019-11-14 08:05:00,660] multiqc.modules.qualimap.qualimap [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:00,929] multiqc.modules.preseq.preseq [DEBUG ] Could not find any preseq data in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:00,941] multiqc.modules.quast.quast [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:01,674] multiqc.modules.rseqc.rseqc [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:01,684] multiqc.modules.busco.busco [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:01,696] multiqc.modules.goleft_indexcov.goleft_indexcov [DEBUG ] Did not find goleft indexcov outputs in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:01,901] multiqc.modules.snpeff.snpeff [DEBUG ] Could not find any data in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:02,065] multiqc.modules.gatk.gatk [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:02,299] multiqc.modules.htseq.htseq [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:02,451] multiqc.modules.bcftools.bcftools [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:02,460] multiqc.modules.featureCounts.feature_counts [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:04,109] multiqc.modules.picard.picard [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:04,123] multiqc.modules.prokka.prokka [DEBUG ] Could not find any Prokka data in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:04,289] multiqc.modules.samblaster.samblaster [DEBUG ] Could not find any data in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:04,734] multiqc.modules.samtools.samtools [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:04,884] multiqc.modules.bamtools.bamtools [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:04,906] multiqc.modules.bismark.bismark [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:04,915] multiqc.modules.hicup.hicup [DEBUG ] Could not find any HiCUP data in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:04,927] multiqc.modules.salmon.salmon [DEBUG ] Could not find any Salmon data in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:05,103] multiqc.modules.kallisto.kallisto [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:06,111] multiqc.modules.slamdunk.slamdunk [DEBUG ] No slamdunk reports found.
[2019-11-14 08:05:06,124] multiqc.modules.star.star [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:06,134] multiqc.modules.tophat.tophat [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:06,282] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:06,430] multiqc.modules.bowtie1.bowtie1 [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:06,582] multiqc.modules.cutadapt.cutadapt [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:06,787] multiqc.modules.trimmomatic.trimmomatic [DEBUG ] Could not find any Trimmomatic data in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:06,946] multiqc.modules.skewer.skewer [DEBUG ] Could not find any data in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:06,955] multiqc.modules.fastq_screen.fastq_screen [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:16,909] multiqc.modules.fastqc.fastqc [INFO ] Found 33 reports
[2019-11-14 08:05:18,314] multiqc.modules.clusterflow.clusterflow [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HJ777BGXC/merged',)
[2019-11-14 08:05:18,352] multiqc [INFO ] Report : multiqc_report.html
[2019-11-14 08:05:18,353] multiqc [INFO ] Data : multiqc_data
[2019-11-14 08:05:18,353] multiqc [DEBUG ] Moving data file from '/state/partition1/job-5626375/tmpu7ATpb/multiqc_data/multiqc_general_stats.txt' to '/beegfs/mk5636/logs/html/HJ777BGXC/merged/multiqc_data'
[2019-11-14 08:05:18,355] multiqc [DEBUG ] Moving data file from '/state/partition1/job-5626375/tmpu7ATpb/multiqc_data/multiqc_sources.txt' to '/beegfs/mk5636/logs/html/HJ777BGXC/merged/multiqc_data'
[2019-11-14 08:05:18,373] multiqc [DEBUG ] Moving data file from '/state/partition1/job-5626375/tmpu7ATpb/multiqc_data/multiqc_fastqc.txt' to '/beegfs/mk5636/logs/html/HJ777BGXC/merged/multiqc_data'
[2019-11-14 08:05:18,526] multiqc [INFO ] MultiQC complete