HJ5TCBCXX_l01n02_t0rr1r201p.352000000589e9.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HJ5TCBCXX_l01n02_t0rr1r201p.352000000589e9.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14080
Sequences flagged as poor quality	0
Sequence length	51
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG	76	0.5397727272727273	Illumina Single End PCR Primer 1 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTGACT	20	6.797805E-4	45.000004	2
CACACGT	130	0.0	45.000004	19
GAAATTG	20	6.797805E-4	45.000004	24
CGGGGGC	20	6.797805E-4	45.000004	35
TTCCGAC	20	6.797805E-4	45.000004	28
AGGCGAG	20	6.797805E-4	45.000004	16
CTGAACA	30	2.0159514E-6	45.000004	26
TCGCCGT	20	6.797805E-4	45.000004	45
AACTAGA	40	6.028131E-9	45.000004	29
GCGCAGA	20	6.797805E-4	45.000004	12
TGGCGGA	20	6.797805E-4	45.000004	8
CAGGCGA	20	6.797805E-4	45.000004	15
AGCGCAG	30	2.0159514E-6	45.000004	11
GGGAAAT	20	6.797805E-4	45.000004	22
TGAACTA	40	6.028131E-9	45.000004	27
TTGTGTA	30	2.0159514E-6	45.000004	28
GCACACG	145	0.0	45.000004	18
GTCAGGC	20	6.797805E-4	45.000004	13
AATTGTG	30	2.0159514E-6	45.000004	26
CGCCGAG	30	2.0159514E-6	45.000004	13