FastQCFastQC Report
Sat 2 Nov 2019
HJ5LLBGXC_n01_MTS10mS1-N.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJ5LLBGXC_n01_MTS10mS1-N.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8048203
Sequences flagged as poor quality0
Sequence length76
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATAGG117600.066.510156
CCTATAC67050.066.339155
GGTATAG202100.066.304385
TTATAGG183650.066.2950746
CTATACG83050.065.862336
CTTATAG100300.065.8057565
GTATAGG228500.065.611666
CGTATAA100900.065.51855
GCTATAC98850.065.142485
CGTATAG125150.065.1271065
CTTATAC95700.064.3245855
TATACGG121550.064.2324147
GGTATAC108300.064.079255
CCTATAG73400.063.937535
TATAGGG212950.063.8772967
GTATAGC136000.063.86766
TTATAGT188250.063.838566
GTTATAG199700.063.7890975
TTATACG115100.063.6676946
AGTATAG161600.063.64755
Produced by FastQC (version 0.11.5)