FastQCFastQC Report
Wed 6 Nov 2019
HJ5KLBGXC_n01_Ctr2h24hCut_Nov1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJ5KLBGXC_n01_Ctr2h24hCut_Nov1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences145445
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGG2530.17394891539757296No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGAATAA250.002565903122.0055032
CGGCGGT302.8511495E-422.0055033
GGGTCTG353.1841788E-522.0055031
TGGAACT555.144102E-922.0055031
GATCATG353.1841788E-522.0055031
AGGAATA302.8511495E-422.0055031
GAATAAG250.002565903122.0055033
TGCGGGT250.002565903122.0055033
CCTCCGA250.002565903122.0055036
AATGACT250.002565903122.0055032
TGCTGAA250.002565903122.0055031
GGAACTA353.1841788E-522.0055032
CTCGAGG353.1841788E-522.0055031
ATGCGAT353.1841788E-522.0055031
ATCGGCG403.5716857E-622.0055031
TGGTGAC250.002565903122.0055036
TTACCGC302.8511495E-422.0055031
AGTGTCG250.002565903122.0055034
TACGTCC250.002565903122.0055031
ACGCGCA250.002565903122.0055033
Produced by FastQC (version 0.11.5)