FastQCFastQC Report
Sun 30 Jun 2024
HJ2JWDSXC_n02_SAHA_5.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHJ2JWDSXC_n02_SAHA_5.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences288265878
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG219493977.614288986364179No Hit
TCGGCCTTAAAGCGGCCAAGTTGATAACGGACTAGCCTTATTTAAACTTG14607420.5067342725870594No Hit
GCTCTTCCGATCAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATC8645660.299919645709854Illumina Single End PCR Primer 1 (100% over 38bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAAAAAAAAAAAA7939310.2754162252946219No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAAAAAAAAAAAAAA4380210.15195034633963855No Hit
GCTCTTCCGATCTGCTCTTCCGATCTGCTCTTCCGATCTGCTCTTCCGAT3561610.12355295134861574No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAAAAAAAAAAAAA3389780.11759213485544757No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGG3144350.10907811988764067No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)