MultiQC Report

A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

General Statistics

Showing ²⁷⁸/₂₇₈ rows and ³/₅ columns.

Sample Name	% Dups	% GC	Length	% Failed	M Seqs
HHV3KAFX2_n01_1910-d02-rep1	91.6%	44%	151	25%	1.7
HHV3KAFX2_n01_1910-d04-rep1	69.4%	46%	151	33%	1.2
HHV3KAFX2_n01_1910-d06-rep1	59.6%	48%	151	25%	0.8
HHV3KAFX2_n01_1910-d08-rep1	56.3%	45%	151	17%	0.6
HHV3KAFX2_n01_1910-d12-rep1	61.7%	46%	151	25%	1.0
HHV3KAFX2_n01_1911-d02-rep1	52.0%	40%	151	25%	0.5
HHV3KAFX2_n01_1911-d04-rep1	47.1%	45%	151	8%	0.7
HHV3KAFX2_n01_1911-d06-rep1	56.5%	47%	151	17%	0.8
HHV3KAFX2_n01_1911-d08-rep1	52.7%	45%	151	25%	0.7
HHV3KAFX2_n01_1911-d12-rep1	52.1%	45%	151	8%	0.7
HHV3KAFX2_n01_1912-d02-rep1	82.9%	43%	151	25%	0.4
HHV3KAFX2_n01_1912-d04-rep1	61.6%	45%	151	33%	0.8
HHV3KAFX2_n01_1912-d06-rep1	63.2%	42%	151	17%	0.1
HHV3KAFX2_n01_1912-d08-rep1	64.4%	47%	151	17%	0.9
HHV3KAFX2_n01_1912-d12-rep1	53.4%	46%	151	17%	0.7
HHV3KAFX2_n01_1913-d02-rep1	67.5%	46%	151	17%	0.8
HHV3KAFX2_n01_1913-d04-rep1	65.0%	45%	151	25%	1.6
HHV3KAFX2_n01_1913-d06-rep1	88.8%	44%	151	25%	1.0
HHV3KAFX2_n01_1913-d08-rep1	92.1%	43%	151	25%	0.8
HHV3KAFX2_n01_1914-d02-rep1	56.2%	45%	151	17%	0.9
HHV3KAFX2_n01_1914-d04-rep1	53.3%	46%	151	33%	0.8
HHV3KAFX2_n01_1914-d06-rep1	61.7%	48%	151	25%	0.9
HHV3KAFX2_n01_1914-d08-rep1	76.2%	45%	151	25%	0.7
HHV3KAFX2_n01_1914-d12-rep1	50.5%	48%	151	25%	0.6
HHV3KAFX2_n01_1915-d02-rep1	65.3%	47%	151	25%	1.0
HHV3KAFX2_n01_1915-d04-rep1	69.3%	46%	151	25%	0.9
HHV3KAFX2_n01_1915-d06-rep1	53.8%	46%	151	25%	0.8
HHV3KAFX2_n01_1915-d08-rep1	64.9%	48%	151	25%	0.5
HHV3KAFX2_n01_1966-d02-rep1	89.9%	43%	151	25%	0.7
HHV3KAFX2_n01_1966-lungLL-rep1	63.0%	49%	151	25%	0.9
HHV3KAFX2_n01_1966-lungLR-rep1	59.3%	44%	151	17%	0.9
HHV3KAFX2_n01_1966-lungMR-rep1	69.4%	47%	151	25%	0.8
HHV3KAFX2_n01_1966-lungUL-rep1	64.2%	51%	151	33%	0.8
HHV3KAFX2_n01_1966-lungUR-rep1	51.7%	46%	151	8%	0.6
HHV3KAFX2_n01_1967-d02-rep1	56.1%	44%	151	25%	0.9
HHV3KAFX2_n01_1967-d04-rep1	57.8%	46%	151	17%	1.0
HHV3KAFX2_n01_1967-d06-rep1	80.8%	47%	151	25%	0.9
HHV3KAFX2_n01_1967-d08-rep1	77.6%	46%	151	25%	0.6
HHV3KAFX2_n01_1968-d02-rep1	89.8%	43%	151	17%	0.7
HHV3KAFX2_n01_1968-lungLL-rep1	64.8%	47%	151	25%	0.8
HHV3KAFX2_n01_1968-lungLR-rep1	61.9%	46%	151	17%	1.1
HHV3KAFX2_n01_1968-lungMR-rep1	65.9%	46%	151	25%	0.7
HHV3KAFX2_n01_1968-lungUL-rep1	72.0%	46%	151	25%	1.4
HHV3KAFX2_n01_1968-lungUR-rep1	65.0%	50%	151	25%	0.7
HHV3KAFX2_n01_1969-d02-rep1	88.2%	43%	151	33%	0.6
HHV3KAFX2_n01_1969-lungLL-rep1	60.3%	45%	151	25%	1.2
HHV3KAFX2_n01_1969-lungLR-rep1	19.9%	44%	151	8%	0.0
HHV3KAFX2_n01_1969-lungMR-rep1	51.1%	45%	151	17%	0.7
HHV3KAFX2_n01_1969-lungUL-rep1	62.8%	44%	151	25%	1.3
HHV3KAFX2_n01_1969-lungUR-rep1	16.2%	43%	151	8%	0.0
HHV3KAFX2_n01_1970-d02-rep1	89.3%	43%	151	33%	0.7
HHV3KAFX2_n01_1970-d04-rep1	81.3%	43%	151	33%	0.4
HHV3KAFX2_n01_1970-d06-rep1	74.1%	48%	151	25%	2.8
HHV3KAFX2_n01_1970-d08-rep1	53.6%	47%	151	25%	0.5
HHV3KAFX2_n01_1971-d02-rep1	0.0%	44%	151	25%	0.0
HHV3KAFX2_n01_1971-d04-rep1	91.0%	43%	151	17%	0.9
HHV3KAFX2_n01_1971-d06-rep1	78.3%	44%	151	42%	0.6
HHV3KAFX2_n01_1971-d08-rep1	55.8%	45%	151	25%	0.7
HHV3KAFX2_n01_1972-d02-rep1	87.3%	44%	151	42%	0.7
HHV3KAFX2_n01_1972-lungLL-rep1	69.3%	44%	151	25%	0.9
HHV3KAFX2_n01_1972-lungLR-rep1	64.9%	46%	151	25%	0.8
HHV3KAFX2_n01_1972-lungMR-rep1	79.3%	44%	151	25%	1.8
HHV3KAFX2_n01_1972-lungUL-rep1	62.6%	43%	151	25%	0.9
HHV3KAFX2_n01_1972-lungUR-rep1	57.7%	46%	151	17%	0.5
HHV3KAFX2_n01_1973-d02-rep1	68.5%	43%	151	42%	0.5
HHV3KAFX2_n01_1973-d04-rep1	0.0%	43%	151	25%	0.0
HHV3KAFX2_n01_1973-d06-rep1	60.8%	44%	151	25%	1.1
HHV3KAFX2_n01_1973-d08-rep1	82.5%	46%	151	25%	0.6
HHV3KAFX2_n01_1974-d02-rep1	64.1%	44%	151	42%	0.6
HHV3KAFX2_n01_1974-d04-rep1	66.4%	47%	151	33%	1.1
HHV3KAFX2_n01_1974-d06-rep1	55.9%	45%	151	17%	0.4
HHV3KAFX2_n01_1974-d08-rep1	51.9%	45%	151	25%	1.0
HHV3KAFX2_n01_1975-d02-rep1	67.4%	46%	151	25%	0.9
HHV3KAFX2_n01_1975-d04-rep1	58.1%	46%	151	25%	0.8
HHV3KAFX2_n01_1975-d06-rep1	59.4%	45%	151	25%	0.9
HHV3KAFX2_n01_1975-d08-rep1	49.4%	46%	151	8%	0.6
HHV3KAFX2_n01_1975-d12-rep1	63.8%	44%	151	17%	1.1
HHV3KAFX2_n01_1976-d02-rep1	80.4%	48%	151	25%	0.8
HHV3KAFX2_n01_1976-d04-rep1	63.4%	46%	151	25%	0.9
HHV3KAFX2_n01_1976-d06-rep1	68.8%	46%	151	17%	0.9
HHV3KAFX2_n01_1976-d08-rep1	60.7%	46%	151	17%	0.4
HHV3KAFX2_n01_1977-d02-rep1	65.8%	45%	151	33%	0.7
HHV3KAFX2_n01_1977-d04-rep1	61.8%	45%	151	25%	1.0
HHV3KAFX2_n01_1977-d06-rep1	59.6%	44%	151	25%	0.9
HHV3KAFX2_n01_1977-d08-rep1	62.3%	44%	151	17%	1.2
HHV3KAFX2_n01_1978-d02-rep1	76.8%	47%	151	33%	0.8
HHV3KAFX2_n01_1978-d04-rep1	73.3%	46%	151	17%	1.3
HHV3KAFX2_n01_1978-d06-rep1	56.8%	46%	151	17%	0.9
HHV3KAFX2_n01_1978-d08-rep1	54.6%	45%	151	8%	0.5
HHV3KAFX2_n01_1979-d02-rep1	54.7%	45%	151	17%	0.9
HHV3KAFX2_n01_1979-d04-rep1	55.5%	45%	151	8%	1.1
HHV3KAFX2_n01_1979-d06-rep1	53.6%	45%	151	17%	0.9
HHV3KAFX2_n01_1979-d08-rep1	49.7%	46%	151	0%	0.2
HHV3KAFX2_n01_1980-d02-rep1	64.2%	45%	151	17%	0.7
HHV3KAFX2_n01_1980-d04-rep1	91.0%	44%	151	17%	1.0
HHV3KAFX2_n01_1980-d06-rep1	91.4%	44%	151	25%	0.7
HHV3KAFX2_n01_1980-d08-rep1	60.1%	48%	151	25%	0.6
HHV3KAFX2_n01_1980-d12-rep1	67.7%	45%	151	25%	0.9
HHV3KAFX2_n01_1981-d02-rep1	51.5%	48%	151	25%	0.5
HHV3KAFX2_n01_1981-d04-rep1	63.3%	47%	151	8%	0.7
HHV3KAFX2_n01_1981-d06-rep1	77.5%	45%	151	25%	1.0
HHV3KAFX2_n01_1981-d08-rep1	63.9%	47%	151	25%	0.7
HHV3KAFX2_n01_1981-d12-rep1	67.7%	45%	151	25%	0.9
HHV3KAFX2_n01_1982-d02-rep1	60.2%	47%	151	17%	0.7
HHV3KAFX2_n01_1982-d04-rep1	69.2%	46%	151	17%	1.0
HHV3KAFX2_n01_1982-d06-rep1	68.5%	48%	151	17%	0.8
HHV3KAFX2_n01_1982-d10-rep1	67.2%	45%	151	25%	0.9
HHV3KAFX2_n01_1982-d12-rep1	65.2%	48%	151	8%	0.7
HHV3KAFX2_n01_1983-d02-rep1	88.8%	45%	151	42%	1.1
HHV3KAFX2_n01_1983-d04-rep1	68.0%	47%	151	42%	0.7
HHV3KAFX2_n01_1983-d06-rep1	60.7%	48%	151	25%	1.1
HHV3KAFX2_n01_1983-d10-rep1	57.2%	43%	151	25%	0.8
HHV3KAFX2_n01_1983-d12-rep1	55.5%	45%	151	25%	0.9
HHV3KAFX2_n01_1984-d02-rep1	70.6%	45%	151	33%	0.5
HHV3KAFX2_n01_1984-d04-rep1	89.2%	44%	151	17%	0.7
HHV3KAFX2_n01_1984-d06-rep1	56.8%	45%	151	25%	0.6
HHV3KAFX2_n01_1984-d10-rep1	62.2%	46%	151	17%	1.0
HHV3KAFX2_n01_1984-d12-rep1	18.0%	45%	151	8%	0.0
HHV3KAFX2_n01_1985-d02-rep1	54.3%	45%	151	17%	0.8
HHV3KAFX2_n01_1985-d04-rep1	54.9%	45%	151	25%	1.0
HHV3KAFX2_n01_1985-d06-rep1	52.9%	44%	151	17%	0.8
HHV3KAFX2_n01_1985-d10-rep1	56.3%	44%	151	25%	0.7
HHV3KAFX2_n01_1985-d12-rep1	60.0%	46%	151	17%	0.9
HHV3KAFX2_n01_1986-d02-rep1	0.0%	42%	151	33%	0.0
HHV3KAFX2_n01_1986-d04-rep1	55.8%	48%	151	17%	0.8
HHV3KAFX2_n01_1986-d06-rep1	85.4%	44%	151	25%	0.8
HHV3KAFX2_n01_1986-d10-rep1	91.8%	44%	151	17%	0.8
HHV3KAFX2_n01_1987-d02-rep1	74.1%	47%	151	17%	0.6
HHV3KAFX2_n01_1987-d04-rep1	39.5%	48%	151	0%	0.3
HHV3KAFX2_n01_1987-d06-rep1	52.9%	45%	151	17%	0.9
HHV3KAFX2_n01_1987-d10-rep1	61.4%	45%	151	25%	1.3
HHV3KAFX2_n01_1987-d12-rep1	58.8%	49%	151	25%	1.1
HHV3KAFX2_n01_HK-1073-rep1	14.9%	46%	151	8%	0.0
HHV3KAFX2_n01_Neg-Control-rep1	59.9%	44%	151	25%	1.1
HHV3KAFX2_n01_Negative-Control-rep1	0.0%	55%	151	36%	0.0
HHV3KAFX2_n01_Stock-control-rep1	58.4%	43%	151	17%	0.0
HHV3KAFX2_n01_pDZ-amp-rep1	95.4%	43%	151	8%	0.8
HHV3KAFX2_n01_pDZ-nonamp-rep1	95.0%	46%	151	17%	0.9
HHV3KAFX2_n01_undetermined	69.0%	46%	151	33%	12.8
HHV3KAFX2_n02_1910-d02-rep1	90.3%	43%	151	33%	1.7
HHV3KAFX2_n02_1910-d04-rep1	68.2%	45%	151	33%	1.2
HHV3KAFX2_n02_1910-d06-rep1	58.5%	47%	151	17%	0.8
HHV3KAFX2_n02_1910-d08-rep1	55.7%	45%	151	25%	0.6
HHV3KAFX2_n02_1910-d12-rep1	60.9%	46%	151	17%	1.0
HHV3KAFX2_n02_1911-d02-rep1	51.1%	40%	151	25%	0.5
HHV3KAFX2_n02_1911-d04-rep1	46.5%	45%	151	8%	0.7
HHV3KAFX2_n02_1911-d06-rep1	55.5%	47%	151	17%	0.8
HHV3KAFX2_n02_1911-d08-rep1	51.9%	45%	151	17%	0.7
HHV3KAFX2_n02_1911-d12-rep1	51.4%	45%	151	8%	0.7
HHV3KAFX2_n02_1912-d02-rep1	81.4%	43%	151	42%	0.4
HHV3KAFX2_n02_1912-d04-rep1	60.7%	45%	151	25%	0.8
HHV3KAFX2_n02_1912-d06-rep1	62.7%	42%	151	17%	0.1
HHV3KAFX2_n02_1912-d08-rep1	63.4%	46%	151	17%	0.9
HHV3KAFX2_n02_1912-d12-rep1	52.8%	46%	151	25%	0.7
HHV3KAFX2_n02_1913-d02-rep1	66.2%	46%	151	25%	0.8
HHV3KAFX2_n02_1913-d04-rep1	63.8%	45%	151	25%	1.6
HHV3KAFX2_n02_1913-d06-rep1	87.1%	44%	151	25%	1.0
HHV3KAFX2_n02_1913-d08-rep1	90.6%	43%	151	17%	0.8
HHV3KAFX2_n02_1914-d02-rep1	55.2%	45%	151	17%	0.9
HHV3KAFX2_n02_1914-d04-rep1	52.4%	46%	151	25%	0.8
HHV3KAFX2_n02_1914-d06-rep1	60.5%	48%	151	17%	0.9
HHV3KAFX2_n02_1914-d08-rep1	75.0%	45%	151	25%	0.7
HHV3KAFX2_n02_1914-d12-rep1	49.6%	47%	151	17%	0.6
HHV3KAFX2_n02_1915-d02-rep1	64.4%	47%	151	17%	1.0
HHV3KAFX2_n02_1915-d04-rep1	67.8%	46%	151	33%	0.9
HHV3KAFX2_n02_1915-d06-rep1	53.0%	46%	151	25%	0.8
HHV3KAFX2_n02_1915-d08-rep1	64.0%	48%	151	25%	0.5
HHV3KAFX2_n02_1966-d02-rep1	88.3%	43%	151	25%	0.7
HHV3KAFX2_n02_1966-lungLL-rep1	62.0%	49%	151	25%	0.9
HHV3KAFX2_n02_1966-lungLR-rep1	58.3%	43%	151	17%	0.9
HHV3KAFX2_n02_1966-lungMR-rep1	68.5%	47%	151	17%	0.8
HHV3KAFX2_n02_1966-lungUL-rep1	63.1%	51%	151	33%	0.8
HHV3KAFX2_n02_1966-lungUR-rep1	50.5%	46%	151	8%	0.6
HHV3KAFX2_n02_1967-d02-rep1	55.3%	44%	151	25%	0.9
HHV3KAFX2_n02_1967-d04-rep1	57.0%	46%	151	17%	1.0
HHV3KAFX2_n02_1967-d06-rep1	79.7%	47%	151	17%	0.9
HHV3KAFX2_n02_1967-d08-rep1	76.7%	46%	151	33%	0.6
HHV3KAFX2_n02_1968-d02-rep1	88.6%	43%	151	17%	0.7
HHV3KAFX2_n02_1968-lungLL-rep1	63.8%	47%	151	33%	0.8
HHV3KAFX2_n02_1968-lungLR-rep1	61.1%	46%	151	17%	1.1
HHV3KAFX2_n02_1968-lungMR-rep1	65.1%	45%	151	25%	0.7
HHV3KAFX2_n02_1968-lungUL-rep1	71.1%	45%	151	33%	1.4
HHV3KAFX2_n02_1968-lungUR-rep1	63.7%	50%	151	17%	0.7
HHV3KAFX2_n02_1969-d02-rep1	86.8%	43%	151	42%	0.6
HHV3KAFX2_n02_1969-lungLL-rep1	59.6%	45%	151	17%	1.2
HHV3KAFX2_n02_1969-lungLR-rep1	20.0%	43%	151	17%	0.0
HHV3KAFX2_n02_1969-lungMR-rep1	50.3%	44%	151	17%	0.7
HHV3KAFX2_n02_1969-lungUL-rep1	62.0%	44%	151	25%	1.3
HHV3KAFX2_n02_1969-lungUR-rep1	16.0%	42%	151	8%	0.0
HHV3KAFX2_n02_1970-d02-rep1	88.0%	43%	151	33%	0.7
HHV3KAFX2_n02_1970-d04-rep1	80.0%	43%	151	42%	0.4
HHV3KAFX2_n02_1970-d06-rep1	72.8%	48%	151	25%	2.8
HHV3KAFX2_n02_1970-d08-rep1	52.7%	47%	151	25%	0.5
HHV3KAFX2_n02_1971-d02-rep1	0.0%	41%	151	25%	0.0
HHV3KAFX2_n02_1971-d04-rep1	89.2%	43%	151	25%	0.9
HHV3KAFX2_n02_1971-d06-rep1	77.3%	43%	151	33%	0.6
HHV3KAFX2_n02_1971-d08-rep1	54.8%	45%	151	17%	0.7
HHV3KAFX2_n02_1972-d02-rep1	86.0%	43%	151	42%	0.7
HHV3KAFX2_n02_1972-lungLL-rep1	68.4%	44%	151	33%	0.9
HHV3KAFX2_n02_1972-lungLR-rep1	64.2%	46%	151	33%	0.8
HHV3KAFX2_n02_1972-lungMR-rep1	78.4%	43%	151	33%	1.8
HHV3KAFX2_n02_1972-lungUL-rep1	61.4%	42%	151	33%	0.9
HHV3KAFX2_n02_1972-lungUR-rep1	57.1%	45%	151	33%	0.5
HHV3KAFX2_n02_1973-d02-rep1	67.5%	43%	151	42%	0.5
HHV3KAFX2_n02_1973-d04-rep1	0.0%	39%	151	25%	0.0
HHV3KAFX2_n02_1973-d06-rep1	60.1%	44%	151	33%	1.1
HHV3KAFX2_n02_1973-d08-rep1	81.0%	45%	151	17%	0.6
HHV3KAFX2_n02_1974-d02-rep1	63.2%	44%	151	33%	0.6
HHV3KAFX2_n02_1974-d04-rep1	65.4%	46%	151	17%	1.1
HHV3KAFX2_n02_1974-d06-rep1	55.0%	45%	151	25%	0.4
HHV3KAFX2_n02_1974-d08-rep1	51.1%	45%	151	17%	1.0
HHV3KAFX2_n02_1975-d02-rep1	66.4%	45%	151	33%	0.9
HHV3KAFX2_n02_1975-d04-rep1	57.0%	45%	151	25%	0.8
HHV3KAFX2_n02_1975-d06-rep1	58.7%	45%	151	33%	0.9
HHV3KAFX2_n02_1975-d08-rep1	48.5%	46%	151	17%	0.6
HHV3KAFX2_n02_1975-d12-rep1	62.9%	43%	151	17%	1.1
HHV3KAFX2_n02_1976-d02-rep1	79.2%	48%	151	33%	0.8
HHV3KAFX2_n02_1976-d04-rep1	62.1%	45%	151	17%	0.9
HHV3KAFX2_n02_1976-d06-rep1	68.0%	46%	151	8%	0.9
HHV3KAFX2_n02_1976-d08-rep1	59.6%	45%	151	8%	0.4
HHV3KAFX2_n02_1977-d02-rep1	64.8%	45%	151	42%	0.7
HHV3KAFX2_n02_1977-d04-rep1	60.9%	45%	151	33%	1.0
HHV3KAFX2_n02_1977-d06-rep1	59.0%	44%	151	17%	0.9
HHV3KAFX2_n02_1977-d08-rep1	61.3%	44%	151	25%	1.2
HHV3KAFX2_n02_1978-d02-rep1	75.8%	47%	151	33%	0.8
HHV3KAFX2_n02_1978-d04-rep1	72.1%	45%	151	25%	1.3
HHV3KAFX2_n02_1978-d06-rep1	56.0%	45%	151	17%	0.9
HHV3KAFX2_n02_1978-d08-rep1	53.6%	45%	151	8%	0.5
HHV3KAFX2_n02_1979-d02-rep1	53.9%	45%	151	25%	0.9
HHV3KAFX2_n02_1979-d04-rep1	54.3%	45%	151	8%	1.1
HHV3KAFX2_n02_1979-d06-rep1	52.9%	45%	151	17%	0.9
HHV3KAFX2_n02_1979-d08-rep1	49.1%	45%	151	0%	0.2
HHV3KAFX2_n02_1980-d02-rep1	63.2%	45%	151	8%	0.7
HHV3KAFX2_n02_1980-d04-rep1	89.6%	44%	151	25%	1.0
HHV3KAFX2_n02_1980-d06-rep1	90.2%	44%	151	25%	0.7
HHV3KAFX2_n02_1980-d08-rep1	59.0%	48%	151	17%	0.6
HHV3KAFX2_n02_1980-d12-rep1	66.4%	45%	151	25%	0.9
HHV3KAFX2_n02_1981-d02-rep1	50.6%	48%	151	17%	0.5
HHV3KAFX2_n02_1981-d04-rep1	62.2%	47%	151	17%	0.7
HHV3KAFX2_n02_1981-d06-rep1	76.2%	45%	151	33%	1.0
HHV3KAFX2_n02_1981-d08-rep1	63.6%	47%	151	25%	0.7
HHV3KAFX2_n02_1981-d12-rep1	66.4%	44%	151	33%	0.9
HHV3KAFX2_n02_1982-d02-rep1	59.3%	47%	151	25%	0.7
HHV3KAFX2_n02_1982-d04-rep1	68.1%	46%	151	8%	1.0
HHV3KAFX2_n02_1982-d06-rep1	67.8%	48%	151	8%	0.8
HHV3KAFX2_n02_1982-d10-rep1	66.1%	45%	151	25%	0.9
HHV3KAFX2_n02_1982-d12-rep1	64.0%	47%	151	17%	0.7
HHV3KAFX2_n02_1983-d02-rep1	87.4%	44%	151	42%	1.1
HHV3KAFX2_n02_1983-d04-rep1	67.0%	47%	151	42%	0.7
HHV3KAFX2_n02_1983-d06-rep1	60.1%	48%	151	25%	1.1
HHV3KAFX2_n02_1983-d10-rep1	56.4%	43%	151	17%	0.8
HHV3KAFX2_n02_1983-d12-rep1	54.7%	45%	151	25%	0.9
HHV3KAFX2_n02_1984-d02-rep1	69.4%	45%	151	33%	0.5
HHV3KAFX2_n02_1984-d04-rep1	87.8%	44%	151	25%	0.7
HHV3KAFX2_n02_1984-d06-rep1	56.0%	45%	151	25%	0.6
HHV3KAFX2_n02_1984-d10-rep1	61.3%	45%	151	17%	1.0
HHV3KAFX2_n02_1984-d12-rep1	17.8%	44%	151	17%	0.0
HHV3KAFX2_n02_1985-d02-rep1	53.3%	45%	151	17%	0.8
HHV3KAFX2_n02_1985-d04-rep1	54.0%	45%	151	25%	1.0
HHV3KAFX2_n02_1985-d06-rep1	52.3%	44%	151	17%	0.8
HHV3KAFX2_n02_1985-d10-rep1	55.4%	44%	151	17%	0.7
HHV3KAFX2_n02_1985-d12-rep1	59.2%	46%	151	17%	0.9
HHV3KAFX2_n02_1986-d02-rep1	0.0%	44%	151	33%	0.0
HHV3KAFX2_n02_1986-d04-rep1	54.5%	48%	151	17%	0.8
HHV3KAFX2_n02_1986-d06-rep1	84.0%	44%	151	25%	0.8
HHV3KAFX2_n02_1986-d10-rep1	90.2%	44%	151	17%	0.8
HHV3KAFX2_n02_1987-d02-rep1	73.2%	47%	151	25%	0.6
HHV3KAFX2_n02_1987-d04-rep1	39.3%	47%	151	0%	0.3
HHV3KAFX2_n02_1987-d06-rep1	52.4%	44%	151	17%	0.9
HHV3KAFX2_n02_1987-d10-rep1	60.3%	45%	151	25%	1.3
HHV3KAFX2_n02_1987-d12-rep1	57.9%	49%	151	25%	1.1
HHV3KAFX2_n02_HK-1073-rep1	14.4%	45%	151	8%	0.0
HHV3KAFX2_n02_Neg-Control-rep1	58.6%	44%	151	25%	1.1
HHV3KAFX2_n02_Negative-Control-rep1	0.0%	48%	151	36%	0.0
HHV3KAFX2_n02_Stock-control-rep1	57.3%	43%	151	33%	0.0
HHV3KAFX2_n02_pDZ-amp-rep1	93.5%	43%	151	8%	0.8
HHV3KAFX2_n02_pDZ-nonamp-rep1	93.1%	46%	151	25%	0.9
HHV3KAFX2_n02_undetermined	67.4%	47%	151	33%	12.8

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Group	Column	Description	ID	Scale
\|\|	FastQC	% Dups	% Duplicate Reads	`percent_duplicates`	None
\|\|	FastQC	% GC	Average % GC Content	`percent_gc`	None
\|\|	FastQC	Length	Average Sequence Length (bp)	`avg_sequence_length`	None
\|\|	FastQC	% Failed	Percentage of modules failed in FastQC report (includes those not plotted here)	`percent_fails`	None
\|\|	FastQC	M Seqs	Total Sequences (millions)	`total_sequences`	read_count

Demultiplexing Report

Demultiplexing Report
Total Read Count: Total number of PF (Passing Filter) reads in this library.
Portion: The proportion of reads that represent the individual library in the entire Library Pool.

Showing ¹³⁹/₁₃₉ rows and ²/₂ columns.

Sample Name	Total Read Count	Portion (%)
undetermined_library	12,845,987	10.6
1910-d02-rep1	1,735,216	1.4
1972-d02-rep1	711,199	0.6
1984-d02-rep1	537,725	0.4
1971-d04-rep1	884,933	0.7
1984-d04-rep1	678,399	0.6
1971-d06-rep1	565,907	0.5
1984-d06-rep1	632,475	0.5
1971-d08-rep1	720,566	0.6
1911-d02-rep1	513,730	0.4
1973-d02-rep1	501,928	0.4
1985-d02-rep1	771,912	0.6
1973-d04-rep1	13.0	0.0
1985-d04-rep1	1,011,670	0.8
1973-d06-rep1	1,137,674	0.9
1985-d06-rep1	847,797	0.7
1973-d08-rep1	564,148	0.5
1912-d02-rep1	362,877	0.3
1974-d02-rep1	604,203	0.5
1986-d02-rep1	41.0	0.0
1974-d04-rep1	1,108,600	0.9
1986-d04-rep1	804,832	0.7
1974-d06-rep1	413,467	0.3
1986-d06-rep1	763,422	0.6
1974-d08-rep1	1,020,021	0.8
1913-d02-rep1	842,330	0.7
1975-d02-rep1	859,653	0.7
1987-d02-rep1	592,635	0.5
1975-d04-rep1	800,678	0.7
1987-d04-rep1	295,328	0.2
1975-d06-rep1	856,806	0.7
1987-d06-rep1	888,114	0.7
1975-d08-rep1	606,472	0.5
1914-d02-rep1	907,887	0.7
1976-d02-rep1	766,264	0.6
1910-d04-rep1	1,185,138	1.0
1976-d04-rep1	874,489	0.7
1910-d06-rep1	779,550	0.6
1976-d06-rep1	901,131	0.7
1910-d08-rep1	615,659	0.5
1976-d08-rep1	403,204	0.3
1915-d02-rep1	1,006,418	0.8
1977-d02-rep1	718,965	0.6
1911-d04-rep1	666,900	0.6
1977-d04-rep1	1,023,755	0.8
1911-d06-rep1	845,887	0.7
1977-d06-rep1	904,236	0.7
1911-d08-rep1	712,882	0.6
1977-d08-rep1	1,217,448	1.0
1966-d02-rep1	711,486	0.6
1978-d02-rep1	824,940	0.7
1912-d04-rep1	771,508	0.6
1978-d04-rep1	1,335,680	1.1
1912-d06-rep1	121,865	0.1
1978-d06-rep1	873,581	0.7
1912-d08-rep1	864,231	0.7
1978-d08-rep1	536,448	0.4
1967-d02-rep1	864,369	0.7
1979-d02-rep1	871,783	0.7
1913-d04-rep1	1,590,322	1.3
1979-d04-rep1	1,071,979	0.9
1913-d06-rep1	1,046,999	0.9
1979-d06-rep1	930,508	0.8
1913-d08-rep1	784,474	0.6
1979-d08-rep1	206,866	0.2
1968-d02-rep1	661,264	0.5
1980-d02-rep1	749,907	0.6
1914-d04-rep1	771,216	0.6
1980-d04-rep1	1,032,503	0.9
1914-d06-rep1	871,266	0.7
1980-d06-rep1	734,024	0.6
1914-d08-rep1	723,840	0.6
1980-d08-rep1	581,168	0.5
1969-d02-rep1	574,643	0.5
1981-d02-rep1	509,581	0.4
1915-d04-rep1	891,134	0.7
1981-d04-rep1	708,641	0.6
1915-d06-rep1	821,716	0.7
1981-d06-rep1	1,007,259	0.8
1915-d08-rep1	529,231	0.4
1981-d08-rep1	652,003	0.5
1970-d02-rep1	676,594	0.6
1982-d02-rep1	716,233	0.6
1967-d04-rep1	966,164	0.8
1982-d04-rep1	982,023	0.8
1967-d06-rep1	933,897	0.8
1982-d06-rep1	820,838	0.7
1967-d08-rep1	584,997	0.5
Negative-Control-rep1	7.0	0.0
1971-d02-rep1	19.0	0.0
1983-d02-rep1	1,070,534	0.9
1970-d04-rep1	432,294	0.4
1983-d04-rep1	707,748	0.6
1970-d06-rep1	2,843,416	2.3
1983-d06-rep1	1,068,616	0.9
1970-d08-rep1	474,493	0.4
Stock-control-rep1	11,351	0.0
1982-d10-rep1	861,436	0.7
1975-d12-rep1	1,073,638	0.9
1969-lungLL-rep1	1,235,475	1.0
1966-lungUR-rep1	562,613	0.5
1983-d10-rep1	812,376	0.7
1983-d12-rep1	907,004	0.7
1969-lungMR-rep1	655,228	0.5
1966-lungLR-rep1	891,062	0.7
1984-d10-rep1	1,033,008	0.9
1984-d12-rep1	14,772	0.0
1969-lungUR-rep1	20,125	0.0
Neg-Control-rep1	1,122,672	0.9
1985-d10-rep1	743,222	0.6
1981-d12-rep1	854,484	0.7
1969-lungLR-rep1	19,822	0.0
HK-1073-rep1	24,756	0.0
1986-d10-rep1	825,534	0.7
1980-d12-rep1	919,059	0.8
1972-lungUL-rep1	866,697	0.7
pDZ-nonamp-rep1	877,530	0.7
1987-d10-rep1	1,321,789	1.1
1987-d12-rep1	1,050,972	0.9
1972-lungLL-rep1	949,306	0.8
pDZ-amp-rep1	826,429	0.7
1910-d12-rep1	991,145	0.8
1968-lungUL-rep1	1,438,214	1.2
1972-lungMR-rep1	1,779,452	1.5
1911-d12-rep1	663,250	0.5
1968-lungLL-rep1	821,668	0.7
1972-lungUR-rep1	452,626	0.4
1912-d12-rep1	713,141	0.6
1968-lungMR-rep1	699,253	0.6
1972-lungLR-rep1	844,607	0.7
1914-d12-rep1	579,351	0.5
1968-lungUR-rep1	743,578	0.6
1966-lungUL-rep1	823,821	0.7
1982-d12-rep1	720,173	0.6
1968-lungLR-rep1	1,083,488	0.9
1966-lungLL-rep1	897,553	0.7
1985-d12-rep1	889,072	0.7
1969-lungUL-rep1	1,344,585	1.1
1966-lungMR-rep1	801,167	0.7

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Visible	Group	Column	Description	ID	Scale
\|\|			Total Read Count	Total Read Count	`Total Read Count`	None
\|\|			Portion (%)	Portion (%)	`Portion (%)`	None

Sample Name	Count	Frequency (%)
GGGGGGGGAGATCTCG	5475452.0	42.6
GTCCGCATAGATCTCG	182563.0	1.4
GGGGGGGGTATGCAGT	161152.0	1.2
GGGGGGGGTACTCCTT	157166.0	1.2
GGGGGGGGAGCTAGAA	157036.0	1.2
GGGGGGGGGGGGGGGG	155666.0	1.2
AGTCAAATAGATCTCG	155386.0	1.2
GGGGGGGGAGGCTTAG	146258.0	1.1
GGGGGGGGCTAGTCGA	141369.0	1.1
GTAGAGATAGATCTCG	136938.0	1.1
GGGGGGGGACTCTAGG	134816.0	1.1
TAGCTTATAGATCTCG	127213.0	1.0
GCCAATATAGATCTCG	121444.0	0.9
GTGGCCATAGATCTCG	121045.0	0.9
GGGGGGGGATTAGACG	118947.0	0.9
TGACCAATAGATCTCG	110618.0	0.9
ACTTGAATAGATCTCG	107701.0	0.8
ACAGTGATAGATCTCG	106544.0	0.8
GGGGGGGGCTCCTTAC	106119.0	0.8
CAGATCATAGATCTCG	105580.0	0.8

Sort	Visible	Group	Column	Description	ID	Scale
\|\|			Count	Count	`Count`	None
\|\|			Frequency (%)	Frequency (%)	`Frequency (%)`	None

Sample Name	Total # of Single-End Reads	Total # PF Reads	% Undetermined	% PhiX Aligned
4.0	131,547,418	121,281,383	10.6	4.5

Sort	Column	Description	ID	Scale
\|\|	Total # of Single-End Reads	Total # of Single-End Reads	`Total # of Single-End Reads`	None
\|\|	Total # PF Reads	Total # PF Reads	`Total # PF Reads`	None
\|\|	% Undetermined	% Undetermined	`% Undetermined`	None
\|\|	% PhiX Aligned	% PhiX Aligned	`% PhiX Aligned`	None

FastQC

FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

Sequence Quality Histograms

The mean quality value across each base position in the read. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Sequence Quality Scores

The number of reads with average quality scores. Shows if a subset of reads has poor quality. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Base Sequence Content

The proportion of each base position for which each of the four normal DNA bases has been called. See the FastQC help.

Click a heatmap row to see a line plot for that dataset.

rollover for sample name

Position: -

%T: -

%C: -

%A: -

%G: -

Per Sequence GC Content

The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Base N Content

The percentage of base calls at each position for which an N was called. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Sequence Length Distribution

All samples have sequences of a single length (151bp).

Sequence Duplication Levels

The relative level of duplication found for every sequence. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Overrepresented sequences

The total amount of overrepresented sequences found in each library. See the FastQC help for further information.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Adapter Content

The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. See the FastQC help. Only samples with ≥ 0.1% adapter contamination are shown.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

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Per Sequence GC Content

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Sequence Length Distribution

Sequence Duplication Levels

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Adapter Content

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