FastQCFastQC Report
Thu 3 Dec 2020
HHV3KAFX2_n02_HK_1073_rep1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHV3KAFX2_n02_HK_1073_rep1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCCAGCCTGGGCAGCAGAGCGTGCCCCAACCTGGCACGGCACCTGCCT18.333333333333332No Hit
AAATCATACCTTGCTGGATGGAAATTCTGCTACGTTCTGAAGTCCATTTG18.333333333333332No Hit
AACGAATACATTTACCCCTTTAAGCCTACGGGAAGCGAGGAGCTTAATCA18.333333333333332No Hit
AACCCGGGGCAAAAGAATAACCAGTTTTGATTTTAGCCGGCACACTCTGC18.333333333333332No Hit
CCTTAGCACTCTGTATTTTTAAATCTGCTGTGTAGAGAGGTTTGGCCAAA18.333333333333332No Hit
GTAGAAGGGGAGGGGAGAGCCATCTTAAAAGAGAAAGCTTTTTTCCTCCC18.333333333333332No Hit
GTTCATCCATTTCATTCTAAGAGCGGGATTCTTCTCCTGTCTTCCTGATG18.333333333333332No Hit
GTATATTCCTTTTGCTGCTTTTGGATGGAGAGTTCTGTGTGTATCTGTCA18.333333333333332No Hit
CATTTAACAAAAAAAACAATAGCATTCACCACTAAAAAAACATTCATCAC18.333333333333332No Hit
ATTTAGGTCTAGCCAAAAAAGAGAGAGAAAGAGAGAGAGAGACAGAGATA18.333333333333332No Hit
AAATTATCACAAACCAAAAAATTAAAACAATACTCCACCCCTTTCCCCAA18.333333333333332No Hit
TCTTGAAATAGAGACACAAAAAACCCCTCAAAAAATCAATGAATCCGGGA18.333333333333332No Hit

[WARN]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)