FastQCFastQC Report
Thu 10 Dec 2020
HHV3KAFX2_n02_1987-d04-rep1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHV3KAFX2_n02_1987-d04-rep1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences295328
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGACGAA259.363188E-487.039604145
TATACTA554.0721698E-665.860865
CTCGTAT450.00966681848.2897833
TGTATAG1201.9758409E-742.2678832
TAACGTG800.002041614436.2234765
ATATAGT1251.2684166E-534.7745324
GTAATAT950.004731033530.5143241
TATATAG1050.00773373927.594163
TCAATAC1050.00773373927.594163
ATATAAG1100.00967926626.3532771
GTATGAG1100.00967926626.3532771
TTATACT1100.0096952826.3443434
GCGAAAG1701.03163E-425.5781821
AGCGAAA1701.03163E-425.5781821
CTACATT1801.524294E-424.1489854
TAGGACT1801.524294E-424.1489854
GTCTTAA1600.002176504822.647351
CGAAAGC1952.6186366E-422.2951492
TAAGGGT2303.1500982E-522.0490724
GTACTGG1650.00260248421.9610671
Produced by FastQC (version 0.11.5)