HHV3KAFX2_n02_1983-d10-rep1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HHV3KAFX2_n02_1983-d10-rep1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	812376
Sequences flagged as poor quality	0
Sequence length	151
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTAGCATGTTGTTTAGTCTCTGTGTTTATGAATTTCCAGTTTTCTTCTTG	1369	0.168518026135681	No Hit
GTTCTATACCACTGTGGTTGGAAAAGATGGTTGATTTGATTTCAGTCCTC	1006	0.12383428363220972	No Hit
ACATTCTACTGAACAACCAATTGGGTTCGTGGGCAAACCAAAATAGGAAC	896	0.11029375560085478	No Hit
GTGTGGGGTTGAAACTCAAAACCACAAGATCAGGAGTCACAGAGCTCCAC	893	0.10992446847272691	No Hit
GTTATGTGTTGGCCTTTGGCTCAAGTCATGAATTTAGGGTCCTGGAATTG	869	0.10697017144770402	No Hit
ACACCTAACAGACCAAGCCACACAGGCAGCCCTTAGAGCCAACTTTAAAA	852	0.1048775443883128	No Hit
TTACCCACCCAGCATGGAGCAACTAAATATGTAGAGCATATATGAACAAA	829	0.10204634307266587	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGGCGT	25	9.405319E-4	86.95523	8
GTTCGTA	40	0.0060377214	54.40401	145
AGCGAAA	220	0.0	46.12683	1
GTTGACA	975	0.0	38.658676	1
TACAACG	95	1.0333412E-4	38.128857	5
GCGAAAG	275	0.0	36.896915	2
ACATGGT	1045	0.0	35.355854	5
GCTACTA	165	6.0450475E-8	35.13126	9
GTTACGT	130	1.6567388E-5	33.454624	1
CAGGTCG	540	0.0	32.20564	7
TAATCGT	90	0.0036380852	32.203655	9
AGGTCGG	545	0.0	31.910175	8
CGAAAGC	320	0.0	31.696568	3
GACATGG	1195	0.0	30.919783	4
TTGACAT	1280	0.0	29.44341	2
GAATCGC	100	0.0060799248	28.994007	1
CGAATTA	100	0.0060890857	28.985077	7
CTACTGA	1310	0.0	28.203714	6
GGTCCTA	1430	0.0	27.868547	9
TGACATG	1330	0.0	27.78131	3