HHV3KAFX2_n02_1974-d06-rep1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HHV3KAFX2_n02_1974-d06-rep1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	413467
Sequences flagged as poor quality	0
Sequence length	151
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTAGCATGTTGTTTAGTCTCTGTGTTTATGAATTTCCAGTTTTCTTCTTG	697	0.16857451743428134	No Hit
ACATTCTACTGAACAACCAATTGGGTTCGTGGGCAAACCAAAATAGGAAC	580	0.14027721680327573	No Hit
TTACCCACCCAGCATGGAGCAACTAAATATGTAGAGCATATATGAACAAA	539	0.13036106871890624	No Hit
GTTATGTGTTGGCCTTTGGCTCAAGTCATGAATTTAGGGTCCTGGAATTG	512	0.12383092241944338	No Hit
GTTTTCTTCTTGTAATTGATTTCTAGTTCTATACCACTGTGGTTGGAAAA	497	0.12020306336418625	No Hit
GTTCTATACCACTGTGGTTGGAAAAGATGGTTGATTTGATTTCAGTCCTC	497	0.12020306336418625	No Hit
ACACCTAACAGACCAAGCCACACAGGCAGCCCTTAGAGCCAACTTTAAAA	463	0.11197991617227009	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTACGT	65	0.0	111.486145	1
TTACGTG	90	3.6379788E-12	72.457214	2
CCTTCGC	65	1.0979145E-5	55.722816	9
GACGACT	40	0.0060770665	54.31	4
CATAGCG	45	0.009666901	48.293106	7
ACGTGTT	135	1.9281288E-10	48.27556	4
CGTGTTG	140	2.746674E-10	46.540157	5
CCGACTA	165	2.910383E-11	43.88687	4
TTACCGC	70	0.0010583582	41.409145	1
CGCACTT	70	0.001063418	41.36903	5
GATATAC	120	9.612901E-6	36.21544	3
TACGTGT	185	4.2091415E-9	35.236645	3
TATACTG	185	4.2291504E-9	35.219578	5
CCACCGA	210	3.783498E-10	34.507618	1
CTACTGA	610	0.0	33.242935	6
CTTATGA	205	1.1403245E-8	31.814342	1
CACCGAC	230	1.0059011E-9	31.503138	2
TACTGAA	695	0.0	31.268917	7
GTTATGT	260	1.10958354E-10	30.658691	1
TACTATA	120	4.0679998E-4	30.190506	2