FastQCFastQC Report
Thu 10 Dec 2020
HHV3KAFX2_n02_1971-d02-rep1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHV3KAFX2_n02_1971-d02-rep1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCCGTTCTTTCCAGGACCTCCGCAAGCCCTGCTCTGGAAGTCAGGAGA15.263157894736842No Hit
CCTCTGCTGAAGGCACACAAAACTCATGATGATAATGTCTCTGTATGAAA15.263157894736842No Hit
CCCCTGTACTCACGGGGTGCAGAGGCGGTGGACAGAACTGTGGTGAGGCG15.263157894736842No Hit
GCCACCACCAGCTGCAAGCGAGTTTGGGAAGGGTGGTTTGACTGGCACAG15.263157894736842No Hit
CAACATTACAATCCATTACAGGACATAAAGAACAGCATTTAAAAAATTAA15.263157894736842No Hit
CTTGAGAGGAGTATATTCCTTTTGCTGCTTTTGGATGGAGAGTTCTGTGT15.263157894736842No Hit
GAATTTATTGTGTTTATTTACAGAGGAAAAAAAAAGAAAACCAGACTTAG15.263157894736842No Hit
CGCGGAATGTGTGCCATTAACTGCTATTTTCTATGTCGTTCCCTTTGCTC15.263157894736842No Hit
CATTAAAACCTATCTCATCTATACCTGGTATGTAATAAAGAACTCATAAA15.263157894736842No Hit
GATTTAACGGAGTTATATTATCCAACATTTATATATTTTTACTGCCGCAG15.263157894736842No Hit
GCTCCAGGCAATTCAGATAACTTAGCCTCTGAAACACTTAGAAACCTTTG15.263157894736842No Hit
CTTTAGAGAAGTTTAATAACTAACAGTTCTGTGAATTAGGCGCCATATTG15.263157894736842No Hit
ATCATGACCTGAGGTGAAGGCAGACAATCGACTGAGCCACCTAGTTGCCC15.263157894736842No Hit
GACTAGATGAGGCCAGAGGCAGGGGAGATGGAGAGAAGCTGACAGACCAG15.263157894736842No Hit
GCTACAATGTGGATGAACATTGAGGACATTATGCTAAGTGAAACAAACCA15.263157894736842No Hit
CACAGCACAGTCTTCTATGCCCCTGAGAAACAAGGTAGGATGCTCTCTAC15.263157894736842No Hit
ACAATGAACCAACCAAAATTACCATATCCTAGCATTATAAAGAAAATATA15.263157894736842No Hit
CTACTAGGGAAGAATTTCTCGAATATAGTGCAGCTTCTGGTACATATGTT15.263157894736842No Hit
CACCTAAATAGCCCAACAGAGAGGTAAGAGATAGGTTGATGGTGGGATAG15.263157894736842No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)