FastQCFastQC Report
Thu 3 Dec 2020
HHV3KAFX2_n02_1912_d12_rep1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHV3KAFX2_n02_1912_d12_rep1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATGGTCCAGGTGACACACCTGCAGGGAGGAGACACAGGAAGTTACTAG111.11111111111111No Hit
AAACAGATAGTTAGGAGAGAATGGAATGTCGCCAGAAAACCACCAACCTG111.11111111111111No Hit
GAATAAACCCTTGATGAAGAGCGAAGGGCAAGAATAAAAACCAGAATATT111.11111111111111No Hit
TTCATGCACTTACTCTCGAACAACTATCCTGTTCCTACCCTCGCCATTTT111.11111111111111No Hit
CCTCTGCATTGTCTCCGAAGAAATAAGATCCTTCATTACTCATGTCAAAG111.11111111111111No Hit
AAACAAGGGTGGTTTTTATCATTAAATAAGCTGAAACGAGAAAGTTCTTA111.11111111111111No Hit
TTGATATTACTACTTGAAAATCAAAAAAAACTCGAAGAGCATGATCCGAA111.11111111111111No Hit
AGGGTTCAGTCCCCGCCTTGGTTAACTCGTTTTTGGCGCTCGACTTGGCA111.11111111111111No Hit
TTGTTGGTGGGACTTAGTGTATTTATTTAGCTTGGTGAAGAAGAGGGGTG111.11111111111111No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)