FastQCFastQC Report
Thu 10 Dec 2020
HHV3KAFX2_n01_1979-d08-rep1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHV3KAFX2_n01_1979-d08-rep1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences206866
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AACGAAC100.0070868256145.03
GACATCG100.0070868256145.07
CCAGCGT259.3761506E-487.08
GCGAAAG1100.079.0909042
AGCGAAA1300.066.923071
CGAAAGC1550.060.8064543
ACTAACG400.0060441354.3759
GCTGTCG553.213027E-452.7272729
TGCCCGT450.00962841448.3333327
CTACCCT700.00105469741.428574
ACCGTTC700.00105469741.428578
CCGTTCA850.00273698434.117659
TTAGGGG1102.4295085E-432.9545444
ACTGTGC1551.4575762E-632.7419368
CACCGTT900.00362163332.222227
TATACTG1153.1535007E-431.5217365
ATTGCAT950.00471872430.5263183
CTATTAG1453.477165E-530.0000021
CTATCCT1000.006063475729.04
ACACCGT1000.006063475729.06
Produced by FastQC (version 0.11.5)