HHV3KAFX2_n01_1974-d06-rep1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HHV3KAFX2_n01_1974-d06-rep1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	413467
Sequences flagged as poor quality	0
Sequence length	151
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTAGCATGTTGTTTAGTCTCTGTGTTTATGAATTTCCAGTTTTCTTCTTG	659	0.15938394116096327	No Hit
GTTATGTGTTGGCCTTTGGCTCAAGTCATGAATTTAGGGTCCTGGAATTG	616	0.14898407853589285	No Hit
TTACCCACCCAGCATGGAGCAACTAAATATGTAGAGCATATATGAACAAA	601	0.1453562194806357	No Hit
GTTCTATACCACTGTGGTTGGAAAAGATGGTTGATTTGATTTCAGTCCTC	544	0.13157035507065862	No Hit
GCATGGAGCAACTAAATATGTAGAGCATATATGAACAAACCTAAGAGAAG	436	0.10544976987280726	No Hit
GTTTTCTTCTTGTAATTGATTTCTAGTTCTATACCACTGTGGTTGGAAAA	431	0.10424048352105487	No Hit
ACATTCTACTGAACAACCAATTGGGTTCGTGGGCAAACCAAAATAGGAAC	427	0.10327305443965297	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGATCG	35	0.0035650248	62.142857	9
GACGACT	50	2.0088596E-4	57.999992	4
GCTACTA	65	1.0925169E-5	55.76923	9
GTTACGT	90	1.3216759E-6	48.333332	1
GTATAAG	65	7.3315727E-4	44.615383	1
TTACGTG	100	2.730234E-6	43.499996	2
AAGACGA	70	0.0010559215	41.42857	2
ACGACTC	70	0.0010559215	41.42857	5
AGCGAAA	150	2.5931513E-8	38.666664	1
CACTAGA	105	1.8518414E-4	34.523808	5
CAGCTAC	110	2.4336914E-4	32.954544	7
GTTATGT	290	0.0	32.5	1
TACGTGT	135	2.139183E-5	32.22222	3
CTACTGA	570	0.0	31.798246	6
ACGTGTT	140	2.742813E-5	31.071428	4
TATAATA	280	7.2759576E-12	31.071428	2
GGCATAA	95	0.0047241217	30.526318	1
CGTGTTG	145	3.4854966E-5	30.0	5
GTATTAT	465	0.0	29.623657	1
CAGTGCA	270	1.70985E-10	29.537035	2