FastQCFastQC Report
Thu 10 Dec 2020
HHV3KAFX2_n01_1973-d04-rep1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHV3KAFX2_n01_1973-d04-rep1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACATACAGCAGACCCGATCTATATGGGAACCTGCAATGGAATCAACTCTA17.6923076923076925No Hit
CACTCAAACTGTTGAAGAGATTGAAGAAGGCAGCGTCTCATTTCCATCCC17.6923076923076925No Hit
CCCTCATCCACGCCCACACGTAGAGGCGCCAGCCCCAAACCACACGAGGC17.6923076923076925No Hit
CCTTGGACCCTTCTCCACCATCTTCATTGTTTAATAAAATGTTTTTTTGA17.6923076923076925No Hit
GCCATGCCTCGGAGGCCCATGAAGGATAGGCAAGATAATATGATCTGGAA17.6923076923076925No Hit
GCTTAAATCCAATGATTGTCGAGCTTGCGGAAAAGACAATGAAGGAATAT17.6923076923076925No Hit
CCAGTGACCAGCTTACAAGCAGATGAAACAGCAGCCAGCCTTCTAAGCAG17.6923076923076925No Hit
GCCCCACTACGTATTCGCTTTTGCTTTCCAAATCCGACTAAGTAAAAGGG17.6923076923076925No Hit
CTATAGATGCTGGGGTGGGTGCAGTAGGCTGTGAGTGAGGAGATTTGGCT17.6923076923076925No Hit
TTACAACTGATAATGGAATTAATGCAGTAAAATGATGCAACATAAATATT17.6923076923076925No Hit
GTTGACATGGTCCTATGATGTTGATCATTCGTTATGTGAATGCGGCCCAT17.6923076923076925No Hit
CTTTAGATGTATTCAGAGCGGCTTGTGGGAGGGTGGAACGGGAAAGCATG17.6923076923076925No Hit
ATTTATTGGTTTTGAGCCAGTGATGAGAGACACAAGTGGAAAATATCCCA17.6923076923076925No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)