HHV3KAFX2_n01_1972-lungUL-rep1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HHV3KAFX2_n01_1972-lungUL-rep1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	866697
Sequences flagged as poor quality	0
Sequence length	151
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACACCTAACAGACCAAGCCACACAGGCAGCCCTTAGAGCCAACTTTAAAA	1397	0.16118666615899213	No Hit
GTTATGTGTTGGCCTTTGGCTCAAGTCATGAATTTAGGGTCCTGGAATTG	1360	0.15691758480760865	No Hit
GTAGCATGTTGTTTAGTCTCTGTGTTTATGAATTTCCAGTTTTCTTCTTG	1264	0.14584104940942452	No Hit
TTACCCACCCAGCATGGAGCAACTAAATATGTAGAGCATATATGAACAAA	1173	0.13534141689656248	No Hit
ACCCCTTACTTGGATGGACTTGACAGATACACACAGAACCCTCCATCCAA	966	0.11145763744422792	No Hit
GTTGACATGGTCCTATGATGTTGATCCTTCGTTTTGTGAATGCGGCCCAT	927	0.1069577949387156	No Hit
ACATTCTACTGAACAACCAATTGGGTTCGTGGGCAAACCAAAATAGGAAC	878	0.10130414666255912	No Hit
GTGTGGGGTTGAAACTCAAAACCACAAGATCAGGAGTCACAGAGCTCCAC	867	0.10003496031485051	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTACGT	135	0.0	69.81462	1
GTATCGG	35	0.0035663827	62.142685	1
TTACGTG	170	0.0	59.709164	2
ATCGACA	40	0.006050681	54.37485	145
GTTGACA	780	0.0	40.897324	1
CGTGTTG	250	0.0	40.602226	5
GCTACTA	290	0.0	39.99989	9
TACGTGT	245	0.0	38.4715	3
ACGTGTT	275	0.0	36.911118	4
TAGTCGG	240	1.8189894E-12	36.25199	8
TATACTG	505	0.0	35.89306	5
GATATAC	185	4.1782187E-9	35.27221	3
ACATGGT	920	0.0	34.67582	5
CCGTAGA	105	1.8535429E-4	34.523712	1
GACATGG	970	0.0	32.888405	4
CATTCTA	1070	0.0	31.169937	2
CTAGTAC	120	4.0562978E-4	30.209993	3
CTACTGA	1395	0.0	29.105541	6
GTTATGT	650	0.0	28.999918	1
CAGTGCA	765	0.0	28.432934	2