FastQCFastQC Report
Thu 3 Dec 2020
HHV3KAFX2_n01_1971_d02_rep1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHV3KAFX2_n01_1971_d02_rep1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCCAAGGAGGACAAAACAGAAGGAGGCAGAGGGGCAGGAGAAGACTCA18.333333333333332No Hit
GTGAAATGGAGATCACTTAGAATAGTACCTATGAGAGAAAGCCCTCAAAA18.333333333333332No Hit
GTCCCAATAGGGCCCCCCATATGTCCACTTGTTCTTGAACCAAATCCACT18.333333333333332No Hit
GTCCAGGGGCATCTCCTGCAGTTTAATCAGCTGATTGTGAATGTTAATTA18.333333333333332No Hit
CTGTAAATCATTTGGGGGATAAGTTGCTATTACTCCAGACAGGAGGGTTT18.333333333333332No Hit
GAATAAAAGAACTAAGAAATTTGATGTCGCAATCTCGCACTCGCGAGATA18.333333333333332No Hit
GGGGAAATCACCTCCAGAGAAGGGAGACAACTTGTGCGAGTCACAGGTTA18.333333333333332No Hit
GAGCCGGTTCTTTGAAAAGAACAAAGCTGACAGAGTCTCAGCCACTCAAG18.333333333333332No Hit
CCCCCCATCCATAGAAAGTAAGGATTAAATAAGTTAACCAAAAGATGAGG18.333333333333332No Hit
CTTTAGAGCCTATGTGGATGGATTCAAACCGAACGGCTGCATTGAGGGCA18.333333333333332No Hit
CTTGTATCATGAGAGAATGTCTCGGGGATCCCCTGCCTTCCCCAGTGAAG18.333333333333332No Hit
GCTAGTAAGTGATATTAAAGTGTTCCATGCTTCTGTCTGAGGGGAGAAGT18.333333333333332No Hit

[WARN]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)