FastQCFastQC Report
Thu 10 Dec 2020
HHV3KAFX2_n01_1971-d02-rep1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHV3KAFX2_n01_1971-d02-rep1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATGAAAAGAGTAGCCCCCCTGCCTGTTTACTAGTTGAAGCATTGCAAGT15.263157894736842No Hit
CTCGATCCCAGAACCCTGGGATCATGACCTGAGCCAAAAGCAGACACTTA15.263157894736842No Hit
CCTGTGTGATGCTCCCCGAGTTCAGCGCACAGCTGGTAAGTTGGGGGTCA15.263157894736842No Hit
GTGGATATTCCACAGTTCTGACTAGGGGAGCGGCTCCTTAACATGCCAGG15.263157894736842No Hit
AAGCTTAACTGACTGAGCCACCCAGGTGCCCCTCTTGTAGGCCTTCTTTT15.263157894736842No Hit
CTTCATTGGTGCCAGGTGCTCCTTGAATTCAAGGTGCTCCTTGAATCCTG15.263157894736842No Hit
GTGTGGGGGTGACACACAAAATGACATACTGAGCAAGTAGCAAGGAGCAG15.263157894736842No Hit
GCATGGAGCAACTAAATATGTAGAGCATATATGAACAAACCTAAGAGAAG15.263157894736842No Hit
AAACAAGGGTGTTTATTATCATAAAATAAGCAGAAACTAGAAAGTTCTTA15.263157894736842No Hit
GCTTTGAATGCAATTTCAAACCTTGATTTCCCTGACAGCAGTTCCAGAAA15.263157894736842No Hit
GCTGCACTGCTGGGTGGGTAAATATTTCTAAATGTTGCATCGTTTTACTG15.263157894736842No Hit
GAGAAGCTGAGGGGAGGGACCGGAACACAGGTGAAAGTGCGAAAGGGGGC15.263157894736842No Hit
TTCCCTTATACTGGAGATCCCCCATATAGCCATGGAACAGGAACAGGATA15.263157894736842No Hit
GAGCTGGAGGGTGTTGTCCCGGGTCCCTAGAGATTCAGACGTTGTGCCTT15.263157894736842No Hit
ACATGAGCCATAGGGTCCTAAGCGGTCCATCTGGAAGGGTCCTTAGAGAT15.263157894736842No Hit
ATATAAAATAAAAACATTAAACATTCATTAGTGTCAGAATCCCTTAGATG15.263157894736842No Hit
GTGGAATAACATCAAGAGACCTATCATTTGGTATAACTGGAATCCAGAAG15.263157894736842No Hit
ATTTTGGTTTGCCCATGAACACAATTGGTTGTTCAGTAGCATGTTGTTTA15.263157894736842No Hit
GAACTGCAGGGCTACCAACCCAGGAAAAGATGGTTGGATGGAGTCAGGCT15.263157894736842No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)