FastQCFastQC Report
Thu 3 Dec 2020
HHV3KAFX2_n01_1968_lungMR_rep1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHV3KAFX2_n01_1968_lungMR_rep1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCATTTTAATATGGCGTTCCGCAGGACAGTGGACTAGGACAGAGCCTTCC112.5No Hit
GGGAAGGAAGGGATTACATTTTAAATTTCTAAACACTTGAGGTGTGGCTT112.5No Hit
GGTATTTTACTTTTAGTGAACATACATATACATTTCTATGGAGAATAAAC112.5No Hit
GGTGTGGGGACCAGCCAGGCGGCAGAAGAACAGGTCGGGGTGGCAGTGAT112.5No Hit
GTGCAGGAGGAGCCTGCCAAGGTCACGGGACTGTCCTCCTTCCTGAACTA112.5No Hit
GGAAAGGGGGGAAGGGGATGCCATCACTAAAAATAACATTTTTATTCAAG112.5No Hit
TGTGTGGACGCACGCCATTTCTTCTTTATCTCATCTGTGGCAGGCTCTAT112.5No Hit
ATGAAATAGATGTTCACTGAAACCACTTATATGCAAAGGATCTTAAGAAT112.5No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)