[2021-05-20 01:52:44,912] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2021-05-20 01:52:44,912] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2021-05-20 01:52:44,912] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-05-20 01:52:44,913] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2021-05-20 01:52:44,913] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2021-05-20 01:52:44,913] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HHV25BGXJ/merged [2021-05-20 01:52:46,624] multiqc [WARNING] MultiQC Version v1.10.1 now available! [2021-05-20 01:52:46,625] multiqc [INFO ] This is MultiQC v1.9 [2021-05-20 01:52:46,625] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HHV25BGXJ/merged [2021-05-20 01:52:46,625] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HHV25BGXJ/merged [2021-05-20 01:52:46,625] multiqc [INFO ] Template : default [2021-05-20 01:52:46,625] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2021-05-20 01:52:46,625] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HHV25BGXJ/merged [2021-05-20 01:52:46,625] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2021-05-20 01:52:46,625] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-6973024/tmp84b2it5n [2021-05-20 01:52:46,743] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S11_R1_F10-FD_fastqc.html [2021-05-20 01:52:46,746] multiqc [DEBUG ] File ignored by longranger/invocation because it 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File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S16_R1_F07-FD_fastqc.html [2021-05-20 01:53:35,426] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S16_R1_D09-FD_fastqc.html [2021-05-20 01:53:35,429] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S16_R1_D09-FD_fastqc.html [2021-05-20 01:53:35,491] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S12_R1_G12-FD_fastqc.html [2021-05-20 01:53:35,493] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S12_R1_G12-FD_fastqc.html [2021-05-20 01:53:35,554] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S16_R1_G02-FD_fastqc.html [2021-05-20 01:53:35,557] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S16_R1_G02-FD_fastqc.html [2021-05-20 01:53:35,613] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S11_R1_H09-FD_fastqc.html [2021-05-20 01:53:35,615] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S11_R1_H09-FD_fastqc.html [2021-05-20 01:53:35,670] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S17_R1_C10-FD_fastqc.html [2021-05-20 01:53:35,673] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S17_R1_C10-FD_fastqc.html [2021-05-20 01:53:35,733] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S17_R1_C04-FD_fastqc.html [2021-05-20 01:53:35,735] multiqc 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multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S17_R1_A04-FD_fastqc.html [2021-05-20 01:53:35,961] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S16_R1_E06-FD_fastqc.html [2021-05-20 01:53:35,963] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S16_R1_E06-FD_fastqc.html [2021-05-20 01:53:36,023] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S12_R1_B11-FD_fastqc.html [2021-05-20 01:53:36,025] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S12_R1_B11-FD_fastqc.html [2021-05-20 01:53:36,080] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S12_R1_C08-FD_fastqc.html [2021-05-20 01:53:36,082] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S12_R1_C08-FD_fastqc.html [2021-05-20 01:53:36,140] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S11_R1_E02-FD_fastqc.html [2021-05-20 01:53:36,142] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S11_R1_E02-FD_fastqc.html [2021-05-20 01:53:36,200] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S17_R1_C01-FD_fastqc.html [2021-05-20 01:53:36,203] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S17_R1_C01-FD_fastqc.html [2021-05-20 01:53:36,266] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S12_R1_H10-FD_fastqc.html [2021-05-20 01:53:36,269] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S12_R1_H10-FD_fastqc.html [2021-05-20 01:53:36,335] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S12_R1_C06-FD_fastqc.html [2021-05-20 01:53:36,337] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S12_R1_C06-FD_fastqc.html [2021-05-20 01:53:36,383] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S17_R1_H12-FD_fastqc.html [2021-05-20 01:53:36,385] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S17_R1_H12-FD_fastqc.html [2021-05-20 01:53:36,445] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S16_R1_E10-FD_fastqc.html [2021-05-20 01:53:36,447] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S16_R1_E10-FD_fastqc.html [2021-05-20 01:53:36,500] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S16_R1_C08-FD_fastqc.html [2021-05-20 01:53:36,502] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S16_R1_C08-FD_fastqc.html [2021-05-20 01:53:36,547] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S11_R1_G03-FD_fastqc.html [2021-05-20 01:53:36,550] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S11_R1_G03-FD_fastqc.html [2021-05-20 01:53:36,602] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S11_R1_E08-FD_fastqc.html [2021-05-20 01:53:36,604] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S11_R1_E08-FD_fastqc.html [2021-05-20 01:53:36,664] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S16_R1_G11-FD_fastqc.html [2021-05-20 01:53:36,667] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S16_R1_G11-FD_fastqc.html [2021-05-20 01:53:36,723] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S17_R1_B05-FD_fastqc.html [2021-05-20 01:53:36,725] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S17_R1_B05-FD_fastqc.html [2021-05-20 01:53:36,770] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S17_R1_G04-FD_fastqc.html [2021-05-20 01:53:36,772] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S17_R1_G04-FD_fastqc.html [2021-05-20 01:53:36,836] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S12_R1_F12-FD_fastqc.html [2021-05-20 01:53:36,838] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S12_R1_F12-FD_fastqc.html [2021-05-20 01:53:36,905] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S16_R1_E12-FD_fastqc.html [2021-05-20 01:53:36,907] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S16_R1_E12-FD_fastqc.html [2021-05-20 01:53:36,953] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S17_R1_E07-FD_fastqc.html [2021-05-20 01:53:36,955] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S17_R1_E07-FD_fastqc.html [2021-05-20 01:53:37,011] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S16_R1_B10-FD_fastqc.html [2021-05-20 01:53:37,014] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S16_R1_B10-FD_fastqc.html [2021-05-20 01:53:37,070] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S12_R1_G06-FD_fastqc.html [2021-05-20 01:53:37,072] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S12_R1_G06-FD_fastqc.html [2021-05-20 01:53:37,125] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S16_R1_A03-FD_fastqc.html [2021-05-20 01:53:37,127] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S16_R1_A03-FD_fastqc.html [2021-05-20 01:53:37,186] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S11_R1_D09-FD_fastqc.html [2021-05-20 01:53:37,189] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S11_R1_D09-FD_fastqc.html [2021-05-20 01:53:37,251] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S12_R1_E06-FD_fastqc.html [2021-05-20 01:53:37,254] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S12_R1_E06-FD_fastqc.html [2021-05-20 01:53:37,309] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S12_R1_A10-FD_fastqc.html [2021-05-20 01:53:37,311] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S12_R1_A10-FD_fastqc.html [2021-05-20 01:53:37,371] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S16_R1_G08-FD_fastqc.html [2021-05-20 01:53:37,373] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S16_R1_G08-FD_fastqc.html [2021-05-20 01:53:37,418] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S16_R1_G03-FD_fastqc.html [2021-05-20 01:53:37,420] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S16_R1_G03-FD_fastqc.html [2021-05-20 01:53:37,474] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S17_R1_H11-FD_fastqc.html [2021-05-20 01:53:37,476] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n01_S17_R1_H11-FD_fastqc.html [2021-05-20 01:53:37,532] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S17_R1_E09-FD_fastqc.html [2021-05-20 01:53:37,535] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S17_R1_E09-FD_fastqc.html [2021-05-20 01:53:37,589] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S11_R1_E02-FD_fastqc.html [2021-05-20 01:53:37,592] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HHV25BGXJ_n02_S11_R1_E02-FD_fastqc.html [2021-05-20 01:53:37,944] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2021-05-20 01:53:37,945] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2021-05-20 01:53:37,965] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2021-05-20 01:53:37,967] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2021-05-20 01:53:38,135] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 385 samples (table) [2021-05-20 01:53:38,141] multiqc [DEBUG ] No samples found: conpair [2021-05-20 01:53:38,149] multiqc [DEBUG ] No samples found: peddy [2021-05-20 01:53:38,154] multiqc [DEBUG ] No samples found: somalier [2021-05-20 01:53:38,159] multiqc [DEBUG ] No samples found: methylQA [2021-05-20 01:53:38,173] multiqc [DEBUG ] No samples found: mosdepth [2021-05-20 01:53:38,180] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-05-20 01:53:38,185] multiqc [DEBUG ] No samples found: qualimap [2021-05-20 01:53:38,191] multiqc [DEBUG ] No samples found: preseq [2021-05-20 01:53:38,198] multiqc [DEBUG ] No samples found: quast [2021-05-20 01:53:38,203] multiqc [DEBUG ] No samples found: qorts [2021-05-20 01:53:38,208] multiqc [DEBUG ] No samples found: rna_seqc [2021-05-20 01:53:38,216] multiqc [DEBUG ] No samples found: rockhopper [2021-05-20 01:53:38,222] multiqc [DEBUG ] No samples found: rsem [2021-05-20 01:53:38,245] multiqc [DEBUG ] No samples found: rseqc [2021-05-20 01:53:38,251] multiqc [DEBUG ] No samples found: busco [2021-05-20 01:53:38,258] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-05-20 01:53:38,262] multiqc [DEBUG ] No samples found: disambiguate [2021-05-20 01:53:38,269] multiqc [DEBUG ] No samples found: supernova [2021-05-20 01:53:38,296] multiqc [DEBUG ] No samples found: deeptools [2021-05-20 01:53:38,305] multiqc [DEBUG ] No samples found: sargasso [2021-05-20 01:53:38,311] multiqc [DEBUG ] No samples found: verifybamid [2021-05-20 01:53:38,318] multiqc [DEBUG ] No samples found: mirtrace [2021-05-20 01:53:38,323] multiqc [DEBUG ] No samples found: happy [2021-05-20 01:53:38,330] multiqc [DEBUG ] No samples found: mirtop [2021-05-20 01:53:38,343] multiqc [DEBUG ] No samples found: homer [2021-05-20 01:53:38,349] multiqc [DEBUG ] No samples found: macs2 [2021-05-20 01:53:38,355] multiqc [DEBUG ] No samples found: theta2 [2021-05-20 01:53:38,360] multiqc [DEBUG ] No samples found: snpeff [2021-05-20 01:53:38,371] multiqc [DEBUG ] No samples found: gatk [2021-05-20 01:53:38,385] multiqc [DEBUG ] No samples found: htseq [2021-05-20 01:53:38,392] multiqc [DEBUG ] No samples found: bcftools [2021-05-20 01:53:38,399] multiqc [DEBUG ] No samples found: featureCounts [2021-05-20 01:53:38,408] multiqc [DEBUG ] No samples found: fgbio [2021-05-20 01:53:38,435] multiqc [DEBUG ] No samples found: dragen [2021-05-20 01:53:38,441] multiqc [DEBUG ] No samples found: dedup [2021-05-20 01:53:38,447] multiqc [DEBUG ] No samples found: damageprofiler [2021-05-20 01:53:38,487] multiqc [DEBUG ] No samples found: biobambam2 [2021-05-20 01:53:38,495] multiqc [DEBUG ] No samples found: mtnucratio [2021-05-20 01:53:38,497] multiqc [DEBUG ] No samples found: picard [2021-05-20 01:53:38,502] multiqc [DEBUG ] No samples found: prokka [2021-05-20 01:53:38,507] multiqc [DEBUG ] No samples found: samblaster [2021-05-20 01:53:38,522] multiqc [DEBUG ] No samples found: samtools [2021-05-20 01:53:38,531] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-05-20 01:53:38,539] multiqc [DEBUG ] No samples found: bamtools [2021-05-20 01:53:38,546] multiqc [DEBUG ] No samples found: jellyfish [2021-05-20 01:53:38,559] multiqc [DEBUG ] No samples found: vcftools [2021-05-20 01:53:38,565] multiqc [DEBUG ] No samples found: longranger [2021-05-20 01:53:38,572] multiqc [DEBUG ] No samples found: stacks [2021-05-20 01:53:38,580] multiqc [DEBUG ] No samples found: varscan2 [2021-05-20 01:53:38,609] multiqc [DEBUG ] No samples found: bbmap [2021-05-20 01:53:38,616] multiqc [DEBUG ] No samples found: bismark [2021-05-20 01:53:38,621] multiqc [DEBUG ] No samples found: biscuit [2021-05-20 01:53:38,626] multiqc [DEBUG ] No samples found: hicexplorer [2021-05-20 01:53:38,633] multiqc [DEBUG ] No samples found: hicup [2021-05-20 01:53:38,642] multiqc [DEBUG ] No samples found: hicpro [2021-05-20 01:53:38,648] multiqc [DEBUG ] No samples found: salmon [2021-05-20 01:53:38,654] multiqc [DEBUG ] No samples found: kallisto [2021-05-20 01:53:38,662] multiqc [DEBUG ] No samples found: slamdunk [2021-05-20 01:53:38,667] multiqc [DEBUG ] No samples found: star [2021-05-20 01:53:38,673] multiqc [DEBUG ] No samples found: hisat2 [2021-05-20 01:53:38,679] multiqc [DEBUG ] No samples found: tophat [2021-05-20 01:53:38,685] multiqc [DEBUG ] No samples found: bowtie2 [2021-05-20 01:53:38,691] multiqc [DEBUG ] No samples found: bowtie1 [2021-05-20 01:53:38,698] multiqc [DEBUG ] No samples found: snpsplit [2021-05-20 01:53:38,705] multiqc [DEBUG ] No samples found: kat [2021-05-20 01:53:38,711] multiqc [DEBUG ] No samples found: leehom [2021-05-20 01:53:38,718] multiqc [DEBUG ] No samples found: adapterRemoval [2021-05-20 01:53:38,726] multiqc [DEBUG ] No samples found: clipandmerge [2021-05-20 01:53:38,733] multiqc [DEBUG ] No samples found: cutadapt [2021-05-20 01:53:38,741] multiqc [DEBUG ] No samples found: flexbar [2021-05-20 01:53:38,747] multiqc [DEBUG ] No samples found: kaiju [2021-05-20 01:53:38,754] multiqc [DEBUG ] No samples found: kraken [2021-05-20 01:53:38,760] multiqc [DEBUG ] No samples found: malt [2021-05-20 01:53:38,768] multiqc [DEBUG ] No samples found: trimmomatic [2021-05-20 01:53:38,772] multiqc [DEBUG ] No samples found: sickle [2021-05-20 01:53:38,780] multiqc [DEBUG ] No samples found: skewer [2021-05-20 01:53:38,786] multiqc [DEBUG ] No samples found: sortmerna [2021-05-20 01:53:38,790] multiqc [DEBUG ] No samples found: biobloomtools [2021-05-20 01:53:38,797] multiqc [DEBUG ] No samples found: fastq_screen [2021-05-20 01:53:38,803] multiqc [DEBUG ] No samples found: afterqc [2021-05-20 01:53:38,808] multiqc [DEBUG ] No samples found: fastp [2021-05-20 01:54:36,774] multiqc.modules.fastqc.fastqc [INFO ] Found 770 reports [2021-05-20 01:55:24,934] multiqc [DEBUG ] No samples found: pycoqc [2021-05-20 01:55:24,942] multiqc [DEBUG ] No samples found: minionqc [2021-05-20 01:55:24,948] multiqc [DEBUG ] No samples found: multivcfanalyzer [2021-05-20 01:55:24,954] multiqc [DEBUG ] No samples found: clusterflow [2021-05-20 01:55:24,959] multiqc [DEBUG ] No samples found: bcl2fastq [2021-05-20 01:55:24,965] multiqc [DEBUG ] No samples found: interop [2021-05-20 01:55:24,970] multiqc [DEBUG ] No samples found: ivar [2021-05-20 01:55:24,975] multiqc [DEBUG ] No samples found: flash [2021-05-20 01:55:24,979] multiqc [DEBUG ] No samples found: seqyclean [2021-05-20 01:55:24,979] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2021-05-20 01:55:24,979] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2021-05-20 01:55:24,979] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2021-05-20 01:55:24,979] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2021-05-20 01:55:24,984] multiqc.plots.table [DEBUG ] Plotting beeswarm instead of table, 770 samples [2021-05-20 01:55:24,986] multiqc [INFO ] Compressing plot data [2021-05-20 01:55:25,375] multiqc [INFO ] Report : multiqc_report.html [2021-05-20 01:55:25,375] multiqc [INFO ] Data : multiqc_data [2021-05-20 01:55:25,375] multiqc [DEBUG ] Moving data file from '/state/partition1/job-6973024/tmp84b2it5n/multiqc_data' to '/scratch/gencore/logs/html/HHV25BGXJ/merged/multiqc_data' [2021-05-20 01:55:25,526] multiqc [INFO ] MultiQC complete