FastQCFastQC Report
Thu 20 May 2021
HHV25BGXJ_n01_S12_R1_A10-FD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHV25BGXJ_n01_S12_R1_A10-FD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTACAGGCATCGTGGTGTCACGCTCGTCGTTTGGTATGGCTTCATTCAG14.3478260869565215No Hit
CATCAAAAGCAGCAGCATGCCAACCAATCCACTCCAATAGATTCTTCGCT14.3478260869565215No Hit
CCTGGTTGCTTTTCTGAGTATGGCTGTTGCTCTTCTCCCAACCATTGTGA14.3478260869565215No Hit
CTCATGCCTAGGCAAAAGATAATAGGCCCTCTTTGCGTGCGATTGGACCA14.3478260869565215No Hit
TGGTGGAACAGATCTTCATGATCTCAGAGAACTCTTCTTTCTTGATCAGT14.3478260869565215No Hit
AGGTATATCTTTCGCTCCGAGTCGGCATTTTGGGCCGCCGGGTTATTAGT14.3478260869565215No Hit
GTATTCGGATTTCCATTTCATCGACGAACGGGGTGAATCAATAATTGTAG14.3478260869565215No Hit
GCTATTCAACTGGTGCACTTGCCAGTTGCATGTGCCTCATATACAACAGG14.3478260869565215No Hit
ACACAATATCAGGTGCAAGATCCCAATGATATTTGCTGCAATGCCGATAG14.3478260869565215No Hit
ATATATGTTGGCATGTCTTCAGACTTCAGGTAAATGGTATCCCGCTGTAT14.3478260869565215No Hit
CATCTGTACCTACTTCGCGCTACCTTTCTGACATGACCCTCGAGGAAATG14.3478260869565215No Hit
CAGTATATGTAACACAACAGGGGTAGAGCAGCCTAAATTTCTTCCTGATT14.3478260869565215No Hit
CCAAGTGGGTATGCACAACCAGACTGTGTTCTAGATGGAATGGCTTTCCT14.3478260869565215No Hit
GTAGAAACAAGGGTGTTGTTTATCATTAAATAAGATGAAACGAGAAAGCT14.3478260869565215No Hit
TTCTTATAACTTCTGTTCGCATGTCGGATGTAAGTAATTCATTTTTAACG14.3478260869565215No Hit
CTAGGTAATTTATGTGGACTTCCCTCCGTGTTACTCCAAATTCAATGAAC14.3478260869565215No Hit
AAATAGGCCTCTAGATTGAATAGACGGGATATTCCTCAATCCTGTGGCCA14.3478260869565215No Hit
GTATTTATTTCTTCTCTCATCAAAAGAAGAAAGAACAATCCTCTCTATTG14.3478260869565215No Hit
TATACACACTGCCTGTTCCGCCGGCTACTGGGAGAAACCTTGTTTTACGG14.3478260869565215No Hit
GATATTTTCAGTGTCAGAAATAATCTAGGAAAAGAGTATGGATAGAGACA14.3478260869565215No Hit
GTACTATATAATGTCTCCTGTAAAATAGTGAGTCACATGTGCGTTGCCAG14.3478260869565215No Hit
GATTAGTGGATTGGTGGTAGTAGCCATCTGTCTGTGAGACCGATGCTGTG14.3478260869565215No Hit
GTGCAAAGGGTTTGTTTTCCAAGGGGAATACAGATGTGCAAGAGAAATGG14.3478260869565215No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)