FastQCFastQC Report
Thu 20 May 2021
HHV25BGXJ_n01_S12_R1_A06-FD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHV25BGXJ_n01_S12_R1_A06-FD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTAAGGACAGAAGCCCTTATAGGGCCTTAATGAGCTGCCCTGTCGGTGA27.4074074074074066No Hit
GTGTAAAAGAACTCCCAATGAGTAAATATAAACAAAGTTTTAAATAATTT13.7037037037037033No Hit
CTGTATTACAATTGAATTCTTACATAATGGAGGTTCTGTCAAAAGGGAGA13.7037037037037033No Hit
GTGTATGTTGATGGAGCAAACGGAGTAAAGGGATTTTCATATAGGTATGG13.7037037037037033No Hit
GATAAGAAGACTTGACTCATGTTGGGCGATCAGCATCACGCATGATCACA13.7037037037037033No Hit
ATAAAGGGAGTGTACATAAATACGGCCTTGCTCAATGCATCCTGTTCAGC13.7037037037037033No Hit
CCTTTCGCATGGTTGGTCAGTTCATTGATGCTTAGTGCTGGCCCATATTT13.7037037037037033No Hit
AGTCAGGTGCAGTCCTAGGGGCCCGATCCCAGCAATTGGTGGCTGGTGAA13.7037037037037033No Hit
CCATTACCATACCTATATGAAAATCCCTTTACTCCGTTTGCTCCATCAAC13.7037037037037033No Hit
CTGCAGCTCTTCTCACCATGTTCCTAGCAGCAATAATCAAGCTTTGATCC13.7037037037037033No Hit
CAGTGAAACACAGGGAACAGAGAAACTGACAATAACTTACTCATCGTCAA13.7037037037037033No Hit
GGGCATGAATAAACATCCATTGTTTCATCTAATCAATTCCACGAAAAGCT13.7037037037037033No Hit
GACTGATGGCCCGAGTGATGGGCTGGCCTCGTACAAAATTTTCAAGATCG13.7037037037037033No Hit
CTCAATTGCCTACGAATTATTTCGATAGATCACTAATATTGTATAAGTCA13.7037037037037033No Hit
ATTCATCGGATACGCCACTCTGACGGCGCATCCGACAATTAAACCTTACC13.7037037037037033No Hit
AAAGTGATCCTCTCGTCATTGCAGCAAATATCATTGGGATCTTGCACCTG13.7037037037037033No Hit
GAACATAGTGAGAAGAGCTGCAGTATCAGCAGATCCACTAGCATCTTTAT13.7037037037037033No Hit
GAATGATGATGTTGATCAAAGCTTGATTATTGCTGCTAGGAACATAGTGA13.7037037037037033No Hit
GTGCCAGGCAGGCGCCCTCCAGTGGTTTTACCCTAGGACACTCCGCAGTT13.7037037037037033No Hit
GAATGCACCTAATTCTCACTATGAGGAATGTTCCTGTTACCCTGATACCG13.7037037037037033No Hit
CTCAAGGAACATCCAGGGAACAGATGAATAATCCAGGAGGGGAAGTGAGC13.7037037037037033No Hit
GTTATTAGTAGAAACAAGGTCGTTTTTAAACTATTCGACACTAATTGATG13.7037037037037033No Hit
TTCCCTTTCGGACCACCCTACCCATTGCATACTATCACCGGACGGTGACG13.7037037037037033No Hit
GTGAATGTGAGGGGATCAGGAATGAGAATAATTCTAAGGCGCAATTCTCC13.7037037037037033No Hit
ATTATATTCAATATGGAAAGAATAAAAGACCTAAGAAATCTAATGTCGCA13.7037037037037033No Hit
CCCCCTACCGTGGGGAATGAGTCTGAGAAGCACACATCTAATCCTGCTCT13.7037037037037033No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)