FastQCFastQC Report
Thu 20 May 2021
HHV25BGXJ_n01_S12_R1_A01-FD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHV25BGXJ_n01_S12_R1_A01-FD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATTCTACAGGACCTGCAAGTTAGTGGGAATCAACATGAGCAAAAAGAA13.0303030303030303No Hit
CCTTCCGTAGAAGGCCCTCTTTTCAAACCGTATTTAAAGCGACGATAAAT13.0303030303030303No Hit
AACTTGCACTTTTTGTAGATTATTCCCATGTTGTGCATGACTGTCTACCT13.0303030303030303No Hit
GTTCCTTACCACTTAGGATCAGAAATGCCTGCAGACGGATGCCAGGTGAG13.0303030303030303No Hit
GCTATTGTTCCAACTCCTTTCACCGCAGCACCTGCGGCACCAGACCTTCT13.0303030303030303No Hit
AGCAAAAGCAGGTAGATATTTAAAGATGAGTCTTCTAACCGAGGTCGAAA13.0303030303030303No Hit
CATATCATCTACGAAGGAATGGCAGTGTTGGGGATTTATTTTTATCTCTG13.0303030303030303No Hit
AGATTCAGTATCGAGACTCCCAAGACCGTACTTAGCATTTTGAACATGCC13.0303030303030303No Hit
CAATTAGCACATTAGCCTTCTCTCCTTTTGCAAGATTGCTCAGTTCATTG13.0303030303030303No Hit
GCTCTATCCATGTTGTTCGGGTCCCCATTCCCATTTAGGGCAATTTTGGA13.0303030303030303No Hit
GCTAATGGGTCTGCTGACACTGCTGCTCTTCTTACTATGTTTCTAGCAGC13.0303030303030303No Hit
ATGCACACTAGTCACATGTACAGTATGTGCTCATCTTTTAATGCCTGCTG13.0303030303030303No Hit
TTAATATCCTTCATGACAAACTATTGGCTTTCTGAACCCTGTGAGCCAAT13.0303030303030303No Hit
GAGAGCAATTGAGCTCAGTGTCATCATTTGAAAGGTTTGAGATATTCCCC13.0303030303030303No Hit
CCTTTTTTATCTTTCTGCAGTGTGCTTTCTGTGTATTTGTTTCTATATCA13.0303030303030303No Hit
GTCTTCTTGCCGGCCTCTTCCACTTGGCTTCGCCATGAAGAGCCTGGAGG13.0303030303030303No Hit
GTTCTACTTCAAGCAGTAGTTGTAAGGATTGCATATATTTTATTTGTTCG13.0303030303030303No Hit
ATTGAAGACCCGAGTCACGAGGGGGAGGGAATACCACTATATGATGCAAT13.0303030303030303No Hit
GCCTTTTAGATATCCTCCACTCAGCCCTAAAAAACCACTACTCTACTTTC13.0303030303030303No Hit
GCTACTGAGGCCTTGATTCCTGTACTTCAAGGACCAAAGCACTGAACTCT13.0303030303030303No Hit
GGGTAGCTCCATGCTAAAATTAGCCACAAATCCATAGCGATAAAAAAAGC13.0303030303030303No Hit
ACTTCATATAAGTGAAGATTTTAGATGATGCTTCATATAACCACTCAGTA13.0303030303030303No Hit
AGTGAATTCTTCCAAATCTTTAAGGAAGTACACAAACTCAGAGAACAAGC13.0303030303030303No Hit
GTGAGGAAGGAGTTGAACCAAGATGCATTAAGCAAAACCCAGGGATCATT13.0303030303030303No Hit
GGTTGTTACTGTTACTGATTTTCGTTCTTGAAATATTTTAGATATTAACC13.0303030303030303No Hit
GACATGACCCTCGAGGAAATGTCACGAGACTGGTTCATGCTCATGCCTAG13.0303030303030303No Hit
ATCAAGTTTCATAAGAGGAAAGAAAGTGATTCCAAGAGGAAAGCTTTCCA13.0303030303030303No Hit
GAGAGGGAGAAACAGTTTCCCCCTGAGCAGGGAGCCCGATGATGGCTCAA13.0303030303030303No Hit
TTTTTAAGGGTTAGAGATCAAAGAGGGAACGTACTATTGTCTCCCGAAGA13.0303030303030303No Hit
ACTAGTGCTGACCAACAAAGTCTCTATCAGAATGCAGATGCATATGTTTT13.0303030303030303No Hit
ACTTTACTGCACTCGAATGAAAGAATAGCCATACCCTTAAGGAGCTCACA13.0303030303030303No Hit
CCCTTATACTGGACATCCTCCATACAGCCATGTAACAGGAACAGGATAAC13.0303030303030303No Hit
GTGCCGCATTTCTTCAATTAACCACCTTATTTCCTCAAATTTCTGTCCCA13.0303030303030303No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)