HHTNVBGXB_n02_CA290_3.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HHTNVBGXB_n02_CA290_3.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	60632574
Sequences flagged as poor quality	0
Sequence length	55
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGCAGTGGTATCAACGCAGAGTACATGGGGGACTTCCCGTGTGGCTCACAACAT	488058	0.804943560535629	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCAGGCATTGAGGCAGCGAGCG	289489	0.47744798035458635	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCAGGCATTGAGGCAGCGAGCGC	232125	0.38283876914082515	No Hit
GCAGTGGTATCAACGCAGAGTACATGGGGGACTTCCCGTGTGGCTCACAACATAA	112383	0.18535086437201231	No Hit
GTGGTATCAACGCAGAGTACATGGGGGACTTCCCGTGTGGCTCACAACATAACTA	77337	0.1275502504643791	No Hit
GCAGTGGTATCAACGCAGAGTACATGGGGAGGCAGGCATTGAGGCAGCGAGCGCA	74342	0.12261066139135048	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AAGCAGT	881315	47.537758	1
AGCAGTG	986730	42.39353	2
GCAGTGG	1278200	32.741516	3
AGTGGTA	1328345	31.493176	5
CAGTGGT	1420895	29.46754	4
GTGGTAT	1462485	28.573954	6
TGGTATC	1459475	28.559706	7
GGTATCA	1492995	27.910904	8
GTATCAA	1503235	27.705086	9
TATCAAC	1508055	27.60376	10
ATCAACG	1520340	27.367405	11
TCAACGC	1523020	27.273731	12
CAACGCA	1530490	27.146759	13
AACGCAG	1544440	26.944368	14
ACGCAGA	1547720	26.886534	15
AGAGTAC	1546200	26.600513	19
GCAGAGT	1559615	26.559805	17
CAGAGTA	1556600	26.540411	18
GAGTACA	1546390	26.536911	20
AGTACAT	1539770	26.444635	21