HHTNVBGXB_n02_CA290_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HHTNVBGXB_n02_CA290_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	57323031
Sequences flagged as poor quality	0
Sequence length	55
%GC	44

Per base quality graph

Per base quality graph

$Per Sequence quality graph$

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGCAGTGGTATCAACGCAGAGTACATGGGGGACTTCCCGTGTGGCTCACAACAT	462838	0.8074206683174167	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGGCAGGCATTGAGGCAGCGAGCG	276089	0.4816371276668884	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAGGCAGGCATTGAGGCAGCGAGCGC	220731	0.3850651233009643	No Hit
GCAGTGGTATCAACGCAGAGTACATGGGGGACTTCCCGTGTGGCTCACAACATAA	105468	0.18398887525678814	No Hit
GTGGTATCAACGCAGAGTACATGGGGGACTTCCCGTGTGGCTCACAACATAACTA	73768	0.12868824050842673	No Hit
GCAGTGGTATCAACGCAGAGTACATGGGGAGGCAGGCATTGAGGCAGCGAGCGCA	70386	0.12278834313558891	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AAGCAGT	834420	47.54413	1
AGCAGTG	933445	42.419758	2
GCAGTGG	1209060	32.737114	3
AGTGGTA	1253450	31.593758	5
CAGTGGT	1343680	29.484236	4
GTGGTAT	1378545	28.693787	6
TGGTATC	1376850	28.651186	7
GGTATCA	1409610	27.997938	8
GTATCAA	1422150	27.764648	9
TATCAAC	1427320	27.646465	10
ATCAACG	1437830	27.417095	11
TCAACGC	1440085	27.321632	12
CAACGCA	1447250	27.191296	13
AACGCAG	1460370	26.991707	14
ACGCAGA	1463310	26.930553	15
AGAGTAC	1459840	26.648731	19
GCAGAGT	1472105	26.602566	17
CAGAGTA	1470340	26.591404	18
GAGTACA	1460430	26.574686	20
AGTACAT	1454580	26.47053	21